Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47058 * 2 1 4 4 H 1.09000 * 109.47309 * 57.26209 * 3 2 1 5 5 C 1.50702 * 109.46704 * 177.25392 * 3 2 1 6 6 H 1.08005 * 120.00131 * 86.06667 * 5 3 2 7 7 C 1.37874 * 120.00426 * 266.06482 * 5 3 2 8 8 N 1.31521 * 119.99877 * 6.71232 * 7 5 3 9 9 Si 1.86802 * 120.00438 * 186.71477 * 7 5 3 10 10 H 1.48497 * 109.47212 * 175.00028 * 9 7 5 11 11 H 1.48498 * 109.47080 * 295.00089 * 9 7 5 12 12 H 1.48507 * 109.46994 * 55.00063 * 9 7 5 13 13 N 1.46895 * 109.47527 * 297.25008 * 3 2 1 14 14 C 1.46846 * 111.00481 * 301.49574 * 13 3 2 15 15 C 1.53038 * 109.52363 * 174.15502 * 14 13 3 16 16 C 1.53119 * 109.27717 * 59.18065 * 15 14 13 17 17 C 1.53112 * 109.16236 * 302.34603 * 16 15 14 18 18 C 1.46844 * 111.00178 * 177.28166 * 13 3 2 19 19 H 1.09001 * 109.46553 * 65.82720 * 18 13 3 20 20 C 1.52996 * 109.46390 * 305.85852 * 18 13 3 21 21 C 1.53003 * 109.47347 * 176.49628 * 20 18 13 22 22 C 1.53002 * 109.47202 * 184.35073 * 21 20 18 23 23 N 1.46904 * 109.47001 * 184.90082 * 22 21 20 24 24 H 1.08996 * 109.47447 * 185.01518 * 1 2 3 25 25 H 1.09000 * 109.46914 * 305.01880 * 1 2 3 26 26 H 1.09003 * 109.47194 * 65.01516 * 1 2 3 27 27 H 1.09006 * 109.46556 * 240.00608 * 2 1 3 28 28 H 1.08997 * 109.46973 * 120.00744 * 2 1 3 29 29 H 0.97000 * 119.99421 * 5.54265 * 8 7 5 30 30 H 1.08996 * 109.46157 * 294.17289 * 14 13 3 31 31 H 1.09003 * 109.46191 * 54.14225 * 14 13 3 32 32 H 1.09007 * 109.50344 * 179.12180 * 15 14 13 33 33 H 1.08999 * 109.50625 * 299.23816 * 15 14 13 34 34 H 1.09005 * 109.52322 * 62.25341 * 16 15 14 35 35 H 1.09000 * 109.52239 * 182.43578 * 16 15 14 36 36 H 1.09004 * 109.50790 * 177.59972 * 17 16 15 37 37 H 1.09013 * 109.50268 * 297.67301 * 17 16 15 38 38 H 1.09003 * 109.47450 * 296.49857 * 20 18 13 39 39 H 1.09002 * 109.46962 * 56.49925 * 20 18 13 40 40 H 1.09002 * 109.46745 * 304.34729 * 21 20 18 41 41 H 1.08994 * 109.47020 * 64.34709 * 21 20 18 42 42 H 1.08996 * 109.46982 * 304.90479 * 22 21 20 43 43 H 1.09002 * 109.47252 * 64.90339 * 22 21 20 44 44 H 1.00902 * 111.00009 * 61.24793 * 23 22 21 45 45 H 1.00897 * 110.99824 * 185.19928 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6371 1.9703 0.8644 5 6 3.5455 1.4429 0.0681 6 1 4.1271 1.3640 -0.8386 7 6 4.1805 1.5441 1.2877 8 7 3.4787 1.5072 2.3995 9 14 6.0374 1.7336 1.3612 10 1 6.4584 1.9416 2.7700 11 1 6.6817 0.5064 0.8281 12 1 6.4483 2.9034 0.5439 13 7 1.6054 2.1156 -1.2312 14 6 2.1013 1.4102 -2.4199 15 6 1.5115 2.0513 -3.6781 16 6 1.9168 3.5269 -3.7312 17 6 1.4306 4.2277 -2.4597 18 6 2.0226 3.5235 -1.2367 19 1 3.1104 3.5798 -1.2764 20 6 1.5232 4.2081 0.0371 21 6 2.0314 5.6508 0.0736 22 6 1.6238 6.3019 1.3969 23 7 2.0085 7.7196 1.3840 24 1 -0.3634 -1.0237 0.0898 25 1 -0.3633 0.5897 0.8416 26 1 -0.3634 0.4341 -0.9315 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.5259 1.3285 2.3658 30 1 3.1887 1.4764 -2.4541 31 1 1.8026 0.3630 -2.3717 32 1 1.8920 1.5374 -4.5610 33 1 0.4246 1.9732 -3.6512 34 1 3.0021 3.6044 -3.7975 35 1 1.4632 3.9981 -4.6031 36 1 1.7531 5.2688 -2.4718 37 1 0.3423 4.1845 -2.4138 38 1 0.4332 4.2066 0.0471 39 1 1.8953 3.6697 0.9088 40 1 3.1179 5.6555 -0.0141 41 1 1.5975 6.2099 -0.7553 42 1 0.5445 6.2193 1.5251 43 1 2.1273 5.7963 2.2209 44 1 1.5388 8.2150 0.6409 45 1 1.8271 8.1516 2.2776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710393834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = -46.255939 kcal Electronic energy + Delta-G solvation = -20854.430725 eV Core-core repulsion = 18097.499134 eV Total energy + Delta-G solvation = -2756.931591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53526 -37.06106 -36.40317 -34.01790 -33.76922 -32.12224 -30.15637 -27.99226 -26.06933 -25.36475 -24.36778 -22.70388 -21.56948 -21.35112 -20.52915 -18.49905 -17.17460 -16.91341 -16.10561 -15.79020 -15.73815 -15.61142 -15.27022 -14.85162 -14.84195 -14.47342 -14.16955 -13.73163 -13.50765 -13.35092 -12.88154 -12.75404 -12.54774 -12.47911 -12.33601 -12.25186 -12.05922 -11.80266 -11.77638 -11.60820 -11.57919 -11.40403 -10.99107 -10.86008 -10.60101 -10.42208 -9.64603 -8.81314 -8.44646 -6.25309 1.46031 1.51618 1.70259 2.53636 3.16943 3.34283 3.68753 3.95501 3.99791 4.09091 4.17356 4.24734 4.35403 4.42384 4.52558 4.53011 4.63656 4.66476 4.70288 4.72201 4.83843 4.86723 4.97858 5.03893 5.10270 5.11969 5.16982 5.17971 5.20510 5.26930 5.30959 5.40349 5.43999 5.51908 5.55411 5.61110 5.66280 6.08432 6.17345 6.19832 6.62138 6.65988 6.67766 6.71860 7.53271 8.82737 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.010600 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.852673 B = 2640.884202 C = 3810.323410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.194 3.806 4 H 0.030 0.970 5 C -0.613 4.613 6 H 0.033 0.967 7 C -0.015 4.015 8 N -0.931 5.931 9 Si 1.091 2.909 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.281 1.281 13 N -0.519 5.519 14 C 0.058 3.942 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.104 4.104 18 C 0.102 3.898 19 H 0.007 0.993 20 C -0.100 4.100 21 C -0.100 4.100 22 C 0.067 3.933 23 N -0.856 5.856 24 H 0.051 0.949 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.004 0.996 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.349 0.651 45 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 7.120 -8.803 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.087 3.913 4 H 0.048 0.952 5 C -0.653 4.653 6 H 0.051 0.949 7 C -0.215 4.215 8 N -0.569 5.569 9 Si 0.916 3.084 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.243 5.243 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.007 4.007 19 H 0.025 0.975 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.063 4.063 23 N -0.387 5.387 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.134 7.063 -7.918 11.787 hybrid contribution -0.899 -0.510 -0.247 1.063 sum -6.033 6.553 -8.164 12.083 Atomic orbital electron populations 1.21578 0.95178 1.00182 1.01446 1.21615 0.95650 0.98402 0.98809 1.19374 0.91851 0.90838 0.89269 0.95249 1.22652 0.94218 1.54177 0.94225 0.94859 1.26673 1.09168 0.93375 0.92304 1.70900 1.09164 1.47478 1.29353 0.83254 0.71925 0.77242 0.75990 1.21010 1.20160 1.20649 1.62438 1.58053 1.01570 1.02256 1.21979 0.95951 0.97954 0.91183 1.21569 1.01201 0.95822 0.95945 1.21549 1.00055 0.95685 0.98043 1.21646 1.00835 0.98581 0.93107 1.21296 0.95656 0.88750 0.95013 0.97538 1.21447 0.99855 0.95139 0.97357 1.21415 1.00189 0.94629 0.97564 1.21639 0.97669 0.89353 0.97689 1.58608 1.67112 1.02654 1.10326 0.93029 0.94528 0.91889 0.93592 0.95883 0.92982 0.97777 0.91989 0.90845 0.91025 0.93733 0.89746 0.90896 0.91129 0.91962 0.94742 0.93968 0.90140 0.94631 0.93535 0.83729 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.71 71.98 0.70 -3.99 16 2 C -0.11 -4.79 5.10 30.59 0.16 -4.63 16 3 C 0.19 9.43 1.08 44.17 0.05 9.47 16 4 H 0.03 1.60 4.52 -2.39 -0.01 1.59 16 5 C -0.61 -33.62 6.81 25.60 0.17 -33.45 16 6 H 0.03 1.89 6.21 -2.91 -0.02 1.87 16 7 C -0.01 -0.84 5.45 84.65 0.46 -0.38 16 8 N -0.93 -55.87 13.55 21.45 0.29 -55.58 16 9 Si 1.09 51.79 29.91 68.60 2.05 53.84 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.52 -21.44 3.94 -850.42 -3.35 -24.79 16 14 C 0.06 2.21 4.80 86.33 0.41 2.62 16 15 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 16 C -0.12 -3.15 6.00 30.67 0.18 -2.97 16 17 C -0.10 -3.09 5.07 30.64 0.16 -2.94 16 18 C 0.10 3.98 1.56 44.94 0.07 4.05 16 19 H 0.01 0.31 7.38 -2.39 -0.02 0.29 16 20 C -0.10 -3.83 4.40 30.59 0.13 -3.69 16 21 C -0.10 -3.24 5.13 30.60 0.16 -3.09 16 22 C 0.07 2.01 6.77 86.30 0.58 2.60 16 23 N -0.86 -20.80 9.60 -186.71 -1.79 -22.59 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.06 2.21 7.83 -2.39 -0.02 2.20 16 27 H 0.05 2.02 6.11 -2.38 -0.01 2.01 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.26 15.69 6.79 -92.71 -0.63 15.06 16 30 H 0.00 0.17 6.48 -2.39 -0.02 0.16 16 31 H 0.06 2.38 5.91 -2.39 -0.01 2.37 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.94 6.66 -2.38 -0.02 1.92 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 1.64 6.06 -2.39 -0.01 1.63 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.08 2.18 6.76 -2.39 -0.02 2.17 16 42 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.35 6.85 9.05 -89.69 -0.81 6.04 16 45 H 0.35 7.10 9.08 -89.70 -0.81 6.28 16 Total: -1.00 -62.35 332.84 0.10 -62.25 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.52 Total: 26.19 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 3.43 Total: -39.32 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.86 Total: -102.96 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -62.35 0.10 -62.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710393834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.997 kcal (2) G-P(sol) polarization free energy of solvation -62.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds