Wall clock time and date at job start Mon Mar 30 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00272 * 2 1 4 4 H 1.08997 * 109.46895 * 34.99654 * 3 2 1 5 5 C 1.52999 * 109.46888 * 275.00015 * 3 2 1 6 6 C 1.53000 * 109.47451 * 299.99865 * 5 3 2 7 7 C 1.53002 * 109.46933 * 300.00268 * 6 5 3 8 8 C 1.52999 * 109.47271 * 59.99621 * 7 6 5 9 9 H 1.08998 * 109.46870 * 60.00245 * 8 7 6 10 10 N 1.46902 * 109.47385 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99373 * 57.97165 * 10 8 7 12 12 C 1.50708 * 109.46566 * 171.53780 * 11 10 8 13 13 H 1.08000 * 120.00365 * 4.40914 * 12 11 10 14 14 C 1.37878 * 119.99603 * 184.41322 * 12 11 10 15 15 N 1.31514 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99636 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47513 * 59.99825 * 16 14 12 18 18 H 1.48500 * 109.46939 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47263 * 299.99276 * 16 14 12 20 20 C 1.46899 * 111.00119 * 294.02442 * 10 8 7 21 21 C 1.53006 * 109.46787 * 328.58449 * 20 10 8 22 22 C 1.52999 * 109.47502 * 88.58719 * 20 10 8 23 23 C 1.52994 * 109.47208 * 300.00245 * 8 7 6 24 24 H 1.09003 * 109.47264 * 60.00224 * 1 2 3 25 25 H 1.09002 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47122 * 300.00016 * 1 2 3 27 27 H 1.00902 * 110.99990 * 236.04663 * 2 1 3 28 28 H 1.08998 * 109.46870 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47440 * 59.99679 * 5 3 2 30 30 H 1.08998 * 109.47233 * 60.00039 * 6 5 3 31 31 H 1.08999 * 109.47375 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47396 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.46973 * 299.99763 * 7 6 5 34 34 H 1.09000 * 109.47496 * 291.53379 * 11 10 8 35 35 H 1.09003 * 109.47443 * 51.54237 * 11 10 8 36 36 H 0.97005 * 120.00119 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47066 * 208.59248 * 20 10 8 38 38 H 1.08999 * 109.47034 * 66.39548 * 21 20 10 39 39 H 1.08996 * 109.47055 * 186.39784 * 21 20 10 40 40 H 1.09000 * 109.47176 * 306.39895 * 21 20 10 41 41 H 1.08991 * 109.47034 * 72.57099 * 22 20 10 42 42 H 1.09005 * 109.47236 * 192.57147 * 22 20 10 43 43 H 1.09002 * 109.46882 * 312.57361 * 22 20 10 44 44 H 1.08998 * 109.47205 * 299.99795 * 23 8 7 45 45 H 1.08999 * 109.47131 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 2.9812 0.9930 -2.2644 7 6 4.3845 1.0006 -1.6548 8 6 4.3191 0.4794 -0.2178 9 1 3.9285 -0.5381 -0.2178 10 7 5.6665 0.4861 0.3674 11 6 6.2455 1.8360 0.3399 12 6 7.5297 1.8477 1.1286 13 1 7.9176 0.9288 1.5428 14 6 8.2093 3.0317 1.3215 15 7 7.7373 4.1507 0.8169 16 14 9.8014 3.0462 2.2985 17 1 10.7966 2.1651 1.6365 18 1 10.3316 4.4320 2.3604 19 1 9.5420 2.5532 3.6751 20 6 6.5417 -0.4761 -0.3153 21 6 5.7091 -1.6601 -0.8111 22 6 7.2186 0.2057 -1.5061 23 6 3.3987 1.3790 0.6096 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8305 -0.5261 -0.7814 28 1 2.4511 2.9103 -1.4370 29 1 1.0611 1.8871 -1.8714 30 1 2.5906 -0.0246 -2.2645 31 1 3.0281 1.3645 -3.2881 32 1 5.0401 0.3594 -2.2439 33 1 4.7751 2.0182 -1.6548 34 1 6.4501 2.1227 -0.6916 35 1 5.5420 2.5422 0.7807 36 1 8.2153 4.9838 0.9530 37 1 7.3020 -0.8323 0.3798 38 1 5.0250 -1.3226 -1.5897 39 1 6.3711 -2.4256 -1.2160 40 1 5.1381 -2.0757 0.0191 41 1 7.9784 0.8983 -1.1444 42 1 7.6862 -0.5486 -2.1390 43 1 6.4732 0.7530 -2.0832 44 1 3.7893 2.3966 0.6096 45 1 3.3518 1.0075 1.6332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712701436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:37 Heat of formation + Delta-G solvation = 9.069750 kcal Electronic energy + Delta-G solvation = -20992.351818 eV Core-core repulsion = 18237.819329 eV Total energy + Delta-G solvation = -2754.532489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87192 -37.16367 -33.44698 -32.67035 -31.17724 -29.40875 -28.89716 -26.80442 -25.63506 -24.67821 -22.35734 -22.20896 -21.48586 -19.06812 -18.03294 -16.20469 -15.98882 -15.52047 -14.72253 -14.55710 -14.37156 -13.85418 -13.79863 -13.51992 -13.09820 -12.95325 -12.30195 -12.10050 -12.00600 -11.91240 -11.73450 -11.39828 -11.21068 -11.11189 -10.96921 -10.80861 -10.69806 -10.61833 -10.35273 -10.33443 -9.96468 -9.82099 -9.38484 -9.33507 -8.91000 -8.33499 -8.26064 -6.94469 -5.95329 -3.94411 3.37324 3.41302 3.44760 4.39769 4.48731 4.89272 4.98770 5.06466 5.23775 5.37980 5.41333 5.43490 5.56380 5.67935 5.69510 5.77727 5.82573 5.83883 5.85413 5.89513 6.01794 6.10097 6.20739 6.22965 6.26131 6.34204 6.43540 6.44819 6.55750 6.56745 6.66620 6.90631 6.95713 7.06037 7.22575 7.22932 7.48011 7.50827 7.56238 7.91668 8.24957 8.40957 8.73017 9.13227 9.68581 11.15279 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.006382 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.963322 B = 4386.153657 C = 4792.063490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.686 5.686 3 C 0.089 3.911 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.114 4.114 7 C -0.167 4.167 8 C 0.087 3.913 9 H 0.079 0.921 10 N -0.526 5.526 11 C 0.185 3.815 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.092 3.908 21 C -0.156 4.156 22 C -0.190 4.190 23 C -0.099 4.099 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.340 0.660 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.001 0.999 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -7.325 -5.825 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.318 5.318 3 C -0.021 4.021 4 H 0.091 0.909 5 C -0.188 4.188 6 C -0.152 4.152 7 C -0.205 4.205 8 C -0.022 4.022 9 H 0.097 0.903 10 N -0.249 5.249 11 C 0.060 3.940 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.017 4.017 21 C -0.214 4.214 22 C -0.248 4.248 23 C -0.137 4.137 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.019 0.981 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.138 -7.358 -4.629 14.129 hybrid contribution 0.784 0.767 -1.313 1.710 sum -10.355 -6.591 -5.942 13.637 Atomic orbital electron populations 1.22199 0.88847 1.01247 0.99986 1.60643 1.06750 1.14328 1.50093 1.21628 0.97215 0.88683 0.94591 0.90925 1.22179 0.98844 1.00760 0.97008 1.21481 0.96362 0.98803 0.98583 1.22741 0.95717 1.03065 0.99022 1.21694 0.91328 0.98877 0.90300 0.90266 1.62606 1.00438 1.10094 1.51778 1.19887 0.94554 0.83737 0.95832 1.21144 1.06330 0.93713 1.32614 0.92314 1.24942 0.97852 0.95606 0.96143 1.69942 1.39571 0.98603 1.45912 0.86653 0.83784 0.76727 0.80782 1.20431 1.21521 1.20278 1.21407 0.94668 0.91804 0.93794 1.22215 1.00108 0.98221 1.00848 1.22783 1.02430 1.00972 0.98614 1.21606 0.91769 1.00634 0.99731 0.96490 0.91968 0.91950 0.83949 0.91201 0.92986 0.92836 0.92620 0.90771 0.91114 0.98148 0.94849 0.93087 0.90872 0.92712 0.93537 0.92372 0.90201 0.94718 0.91992 0.91066 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.50 60.06 0.63 0.91 16 2 N -0.69 -8.72 6.12 -114.01 -0.70 -9.42 16 3 C 0.09 1.24 2.86 -67.71 -0.19 1.04 16 4 H 0.07 0.98 7.80 -51.93 -0.40 0.58 16 5 C -0.15 -1.93 5.52 -26.73 -0.15 -2.08 16 6 C -0.11 -1.49 5.67 -26.73 -0.15 -1.64 16 7 C -0.17 -2.70 3.12 -26.73 -0.08 -2.78 16 8 C 0.09 1.51 1.47 -67.72 -0.10 1.41 16 9 H 0.08 1.31 4.88 -51.93 -0.25 1.05 16 10 N -0.53 -11.04 4.72 -220.14 -1.04 -12.08 16 11 C 0.18 4.62 3.35 -4.97 -0.02 4.60 16 12 C -0.50 -13.78 7.65 -34.44 -0.26 -14.05 16 13 H 0.06 1.63 7.11 -52.49 -0.37 1.26 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.09 1.76 2.79 -67.71 -0.19 1.57 16 21 C -0.16 -2.41 7.77 37.16 0.29 -2.12 16 22 C -0.19 -3.65 7.45 37.16 0.28 -3.37 16 23 C -0.10 -1.71 4.76 -26.74 -0.13 -1.84 16 24 H 0.02 0.16 7.44 -51.93 -0.39 -0.22 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.34 4.16 5.65 -39.29 -0.22 3.94 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 30 H 0.05 0.64 6.26 -51.93 -0.32 0.31 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.20 3.94 -51.93 -0.20 0.99 16 33 H 0.07 1.35 6.53 -51.92 -0.34 1.01 16 34 H 0.00 0.02 4.70 -51.93 -0.24 -0.22 16 35 H 0.03 0.91 5.97 -51.93 -0.31 0.60 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.52 7.57 -51.93 -0.39 1.12 16 38 H 0.05 0.79 5.18 -51.93 -0.27 0.52 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.89 7.62 -51.93 -0.40 0.49 16 41 H 0.08 1.81 6.37 -51.93 -0.33 1.48 16 42 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.06 1.17 3.93 -51.93 -0.20 0.96 16 44 H 0.07 1.39 6.28 -51.93 -0.33 1.07 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -28.37 313.17 -8.93 -37.30 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.45 Total: 5.37 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.17 Total: -16.88 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -1.00 Total: -47.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.37 -8.93 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712701436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.372 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds