Wall clock time and date at job start Mon Mar 30 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00272 * 2 1 4 4 H 1.08997 * 109.46895 * 34.99654 * 3 2 1 5 5 C 1.52999 * 109.46888 * 275.00015 * 3 2 1 6 6 C 1.53000 * 109.47451 * 299.99865 * 5 3 2 7 7 C 1.53002 * 109.46933 * 300.00268 * 6 5 3 8 8 C 1.52999 * 109.47271 * 59.99621 * 7 6 5 9 9 H 1.08998 * 109.46870 * 60.00245 * 8 7 6 10 10 N 1.46902 * 109.47385 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99373 * 57.97165 * 10 8 7 12 12 C 1.50708 * 109.46566 * 171.53780 * 11 10 8 13 13 H 1.08000 * 120.00365 * 4.40914 * 12 11 10 14 14 C 1.37878 * 119.99603 * 184.41322 * 12 11 10 15 15 N 1.31514 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99636 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47513 * 59.99825 * 16 14 12 18 18 H 1.48500 * 109.46939 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47263 * 299.99276 * 16 14 12 20 20 C 1.46899 * 111.00119 * 294.02442 * 10 8 7 21 21 C 1.53006 * 109.46787 * 328.58449 * 20 10 8 22 22 C 1.52999 * 109.47502 * 88.58719 * 20 10 8 23 23 C 1.52994 * 109.47208 * 300.00245 * 8 7 6 24 24 H 1.09003 * 109.47264 * 60.00224 * 1 2 3 25 25 H 1.09002 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47122 * 300.00016 * 1 2 3 27 27 H 1.00902 * 110.99990 * 236.04663 * 2 1 3 28 28 H 1.08998 * 109.46870 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47440 * 59.99679 * 5 3 2 30 30 H 1.08998 * 109.47233 * 60.00039 * 6 5 3 31 31 H 1.08999 * 109.47375 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47396 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.46973 * 299.99763 * 7 6 5 34 34 H 1.09000 * 109.47496 * 291.53379 * 11 10 8 35 35 H 1.09003 * 109.47443 * 51.54237 * 11 10 8 36 36 H 0.97005 * 120.00119 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47066 * 208.59248 * 20 10 8 38 38 H 1.08999 * 109.47034 * 66.39548 * 21 20 10 39 39 H 1.08996 * 109.47055 * 186.39784 * 21 20 10 40 40 H 1.09000 * 109.47176 * 306.39895 * 21 20 10 41 41 H 1.08991 * 109.47034 * 72.57099 * 22 20 10 42 42 H 1.09005 * 109.47236 * 192.57147 * 22 20 10 43 43 H 1.09002 * 109.46882 * 312.57361 * 22 20 10 44 44 H 1.08998 * 109.47205 * 299.99795 * 23 8 7 45 45 H 1.08999 * 109.47131 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8926 -1.4370 6 6 2.9812 0.9930 -2.2644 7 6 4.3845 1.0006 -1.6548 8 6 4.3191 0.4794 -0.2178 9 1 3.9285 -0.5381 -0.2178 10 7 5.6665 0.4861 0.3674 11 6 6.2455 1.8360 0.3399 12 6 7.5297 1.8477 1.1286 13 1 7.9176 0.9288 1.5428 14 6 8.2093 3.0317 1.3215 15 7 7.7373 4.1507 0.8169 16 14 9.8014 3.0462 2.2985 17 1 10.7966 2.1651 1.6365 18 1 10.3316 4.4320 2.3604 19 1 9.5420 2.5532 3.6751 20 6 6.5417 -0.4761 -0.3153 21 6 5.7091 -1.6601 -0.8111 22 6 7.2186 0.2057 -1.5061 23 6 3.3987 1.3790 0.6096 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8305 -0.5261 -0.7814 28 1 2.4511 2.9103 -1.4370 29 1 1.0611 1.8871 -1.8714 30 1 2.5906 -0.0246 -2.2645 31 1 3.0281 1.3645 -3.2881 32 1 5.0401 0.3594 -2.2439 33 1 4.7751 2.0182 -1.6548 34 1 6.4501 2.1227 -0.6916 35 1 5.5420 2.5422 0.7807 36 1 8.2153 4.9838 0.9530 37 1 7.3020 -0.8323 0.3798 38 1 5.0250 -1.3226 -1.5897 39 1 6.3711 -2.4256 -1.2160 40 1 5.1381 -2.0757 0.0191 41 1 7.9784 0.8983 -1.1444 42 1 7.6862 -0.5486 -2.1390 43 1 6.4732 0.7530 -2.0832 44 1 3.7893 2.3966 0.6096 45 1 3.3518 1.0075 1.6332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712701436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:37 Heat of formation + Delta-G solvation = -10.126846 kcal Electronic energy + Delta-G solvation = -20993.184245 eV Core-core repulsion = 18237.819329 eV Total energy + Delta-G solvation = -2755.364916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26919 -38.50411 -34.92892 -34.42256 -32.65441 -30.85579 -30.32031 -28.31032 -27.46098 -25.60673 -24.26123 -23.46414 -22.83829 -20.43570 -19.55722 -18.17495 -17.20292 -17.08075 -16.31822 -16.07174 -15.61056 -15.33883 -15.17040 -14.96424 -14.52600 -14.05271 -13.92302 -13.50197 -13.38180 -13.20564 -13.01060 -12.86323 -12.74506 -12.64786 -12.59990 -12.36017 -12.27789 -12.08820 -11.88690 -11.71284 -11.57711 -11.34993 -11.19076 -10.91917 -10.51367 -10.50375 -9.24123 -8.66245 -8.13313 -6.20150 1.39674 1.42169 1.49664 2.42891 3.18101 3.39371 3.42715 3.82828 3.90889 4.02821 4.25787 4.28146 4.34110 4.41111 4.54067 4.56867 4.59152 4.66891 4.69281 4.75576 4.80783 4.84881 4.88269 4.97569 5.03366 5.07848 5.12225 5.15224 5.22614 5.25421 5.33081 5.38235 5.42350 5.50641 5.56816 5.61096 5.71580 5.77173 6.18282 6.20580 6.57081 6.60961 6.91136 6.97881 7.47801 8.96522 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.006382 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.963322 B = 4386.153657 C = 4792.063490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.099 3.901 4 H 0.075 0.925 5 C -0.144 4.144 6 C -0.107 4.107 7 C -0.158 4.158 8 C 0.091 3.909 9 H 0.099 0.901 10 N -0.542 5.542 11 C 0.208 3.792 12 C -0.511 4.511 13 H 0.052 0.948 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.957 3.043 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.087 3.913 21 C -0.145 4.145 22 C -0.181 4.181 23 C -0.096 4.096 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.345 0.655 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.032 0.968 34 H -0.017 1.017 35 H 0.001 0.999 36 H 0.261 0.739 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 -9.381 -6.830 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.327 5.327 3 C -0.011 4.011 4 H 0.093 0.907 5 C -0.183 4.183 6 C -0.146 4.146 7 C -0.197 4.197 8 C -0.017 4.017 9 H 0.117 0.883 10 N -0.265 5.265 11 C 0.082 3.918 12 C -0.550 4.550 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.021 4.021 21 C -0.202 4.202 22 C -0.239 4.239 23 C -0.135 4.135 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.001 0.999 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.312 -9.438 -5.639 16.506 hybrid contribution 1.117 1.380 -0.980 2.028 sum -11.195 -8.058 -6.619 15.299 Atomic orbital electron populations 1.22253 0.87006 1.02478 1.00447 1.60553 1.08475 1.13140 1.50556 1.21409 0.94789 0.89935 0.95012 0.90697 1.22133 1.00115 0.99701 0.96398 1.21454 0.93935 1.00329 0.98843 1.22580 0.98088 1.00662 0.98356 1.21751 0.89196 0.99873 0.90902 0.88272 1.62449 1.02230 1.08158 1.53657 1.19418 0.92957 0.85470 0.93920 1.21446 1.07402 0.93515 1.32613 0.92956 1.25763 1.01219 0.95237 0.97196 1.70071 1.41052 0.99139 1.47251 0.85621 0.79808 0.76966 0.79332 1.19503 1.20983 1.19762 1.21461 0.94758 0.92734 0.93157 1.22105 1.00134 0.96729 1.01258 1.22651 1.01396 1.00830 0.98992 1.21522 0.94330 0.98391 0.99207 0.95324 0.90371 0.92174 0.83412 0.92995 0.90416 0.90381 0.91274 0.90296 0.94910 0.99942 0.98085 0.93052 0.93015 0.91363 0.91213 0.92014 0.94446 0.91826 0.91871 0.94596 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.50 127.69 1.34 1.82 16 2 N -0.69 -15.85 6.12 -514.63 -3.15 -19.00 16 3 C 0.10 2.65 2.86 44.91 0.13 2.78 16 4 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 5 C -0.14 -3.50 5.52 30.59 0.17 -3.33 16 6 C -0.11 -2.55 5.67 30.59 0.17 -2.37 16 7 C -0.16 -5.05 3.12 30.59 0.10 -4.96 16 8 C 0.09 3.16 1.47 44.91 0.07 3.22 16 9 H 0.10 3.07 4.88 -2.39 -0.01 3.06 16 10 N -0.54 -23.37 4.72 -850.39 -4.01 -27.38 16 11 C 0.21 11.01 3.35 85.56 0.29 11.30 16 12 C -0.51 -29.40 7.65 25.60 0.20 -29.21 16 13 H 0.05 3.01 7.11 -2.91 -0.02 2.99 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 16 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 20 C 0.09 3.33 2.79 44.92 0.13 3.45 16 21 C -0.15 -4.06 7.77 71.98 0.56 -3.50 16 22 C -0.18 -6.97 7.45 71.98 0.54 -6.43 16 23 C -0.10 -3.43 4.76 30.59 0.15 -3.28 16 24 H 0.03 0.45 7.44 -2.39 -0.02 0.43 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 27 H 0.35 7.17 5.65 -89.69 -0.51 6.66 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.53 7.45 -2.39 -0.02 1.52 16 30 H 0.08 1.52 6.26 -2.39 -0.01 1.50 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.43 3.94 -2.39 -0.01 2.42 16 33 H 0.03 1.29 6.53 -2.38 -0.02 1.28 16 34 H -0.02 -0.94 4.70 -2.39 -0.01 -0.95 16 35 H 0.00 0.07 5.97 -2.39 -0.01 0.05 16 36 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 37 H 0.05 2.17 7.57 -2.39 -0.02 2.15 16 38 H 0.07 1.73 5.18 -2.39 -0.01 1.72 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.70 7.62 -2.39 -0.02 1.69 16 41 H 0.04 1.74 6.37 -2.39 -0.02 1.72 16 42 H 0.06 2.03 8.09 -2.38 -0.02 2.01 16 43 H 0.06 2.40 3.93 -2.39 -0.01 2.39 16 44 H 0.04 1.51 6.28 -2.39 -0.01 1.50 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -64.27 313.17 -0.10 -64.37 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.47 Total: 21.01 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.28 Total: -29.85 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -6.88 Total: -103.15 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -64.27 -0.10 -64.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712701436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.243 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds