Wall clock time and date at job start Mon Mar 30 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 N 1.46904 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99966 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46990 * 180.02562 * 5 4 3 7 7 H 1.09007 * 110.62973 * 308.10309 * 6 5 4 8 8 C 1.55138 * 110.70726 * 71.40117 * 6 5 4 9 9 C 1.54905 * 101.65197 * 154.03354 * 8 6 5 10 10 N 1.47844 * 104.80095 * 322.93429 * 9 8 6 11 11 C 1.46895 * 111.00117 * 146.36044 * 10 9 8 12 12 H 1.09004 * 109.47188 * 58.83464 * 11 10 9 13 13 C 1.52992 * 109.47579 * 298.83096 * 11 10 9 14 14 C 1.53009 * 109.46600 * 178.82825 * 11 10 9 15 15 C 1.50697 * 109.47325 * 295.68952 * 14 11 10 16 16 H 1.08005 * 119.99996 * 354.98512 * 15 14 11 17 17 C 1.37870 * 119.99874 * 174.99277 * 15 14 11 18 18 N 1.31519 * 120.00393 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46978 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47195 * 119.99926 * 19 17 15 22 22 H 1.48507 * 109.46786 * 239.99543 * 19 17 15 23 23 C 1.47446 * 108.56222 * 24.09319 * 10 9 8 24 24 H 1.09005 * 109.47566 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47029 * 60.00254 * 1 2 3 26 26 H 1.08999 * 109.47425 * 300.00414 * 1 2 3 27 27 H 1.09006 * 109.47029 * 119.99746 * 2 1 3 28 28 H 1.08999 * 109.47425 * 239.99586 * 2 1 3 29 29 H 1.08997 * 109.47174 * 299.99860 * 3 2 1 30 30 H 1.08999 * 109.47326 * 59.99525 * 3 2 1 31 31 H 1.00897 * 110.99475 * 56.04553 * 4 3 2 32 32 H 1.08997 * 109.47206 * 300.00386 * 5 4 3 33 33 H 1.09007 * 109.46866 * 60.00172 * 5 4 3 34 34 H 1.08999 * 110.98945 * 272.12749 * 8 6 5 35 35 H 1.08999 * 110.98687 * 35.94375 * 8 6 5 36 36 H 1.09003 * 110.37102 * 204.09765 * 9 8 6 37 37 H 1.09009 * 110.46325 * 81.80985 * 9 8 6 38 38 H 1.08996 * 109.47587 * 186.16188 * 13 11 10 39 39 H 1.09010 * 109.46801 * 306.16485 * 13 11 10 40 40 H 1.09001 * 109.47023 * 66.15961 * 13 11 10 41 41 H 1.08995 * 109.47076 * 55.69212 * 14 11 10 42 42 H 1.09004 * 109.46592 * 175.68931 * 14 11 10 43 43 H 0.96991 * 120.00708 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.88530 * 239.60672 * 23 10 9 45 45 H 1.08996 * 109.88701 * 118.42556 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5649 2.7731 0.0000 7 1 5.9320 2.1339 0.8031 8 6 6.1009 2.2952 -1.3751 9 6 7.5053 2.9480 -1.4075 10 7 7.3243 4.2656 -0.7618 11 6 8.5267 4.6545 -0.0129 12 1 9.3801 4.6925 -0.6900 13 6 8.7955 3.6278 1.0891 14 6 8.3125 6.0330 0.6155 15 6 8.1531 7.0623 -0.4737 16 1 8.2803 6.7782 -1.5079 17 6 7.8450 8.3665 -0.1498 18 7 7.6897 8.7124 1.1095 19 14 7.6467 9.6422 -1.4999 20 1 7.8702 9.0031 -2.8215 21 1 6.2747 10.2079 -1.4487 22 1 8.6383 10.7300 -1.3025 23 6 6.1487 4.1960 0.1254 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.8708 0.9162 -0.7805 32 1 3.6863 3.3368 -0.8904 33 1 3.6855 3.3378 0.8896 34 1 6.1746 1.2082 -1.4091 35 1 5.4780 2.6684 -2.1880 36 1 7.8421 3.0727 -2.4367 37 1 8.2189 2.3450 -0.8459 38 1 9.6206 3.9718 1.7128 39 1 7.9015 3.5099 1.7017 40 1 9.0557 2.6703 0.6380 41 1 7.4144 6.0153 1.2329 42 1 9.1733 6.2883 1.2335 43 1 7.4726 9.6298 1.3374 44 1 5.4056 4.9304 -0.1856 45 1 6.4502 4.3839 1.1558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719085927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:44 Heat of formation + Delta-G solvation = -15.186625 kcal Electronic energy + Delta-G solvation = -19480.702463 eV Core-core repulsion = 16725.118139 eV Total energy + Delta-G solvation = -2755.584324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23819 -36.90732 -34.48298 -32.89926 -31.82521 -29.44067 -28.24486 -27.26230 -25.85041 -23.30035 -23.15973 -21.69543 -21.11478 -19.93415 -18.45740 -16.56447 -16.12318 -15.97850 -15.14268 -14.71211 -14.41319 -14.29828 -13.74317 -13.53493 -13.21495 -12.95459 -12.67235 -12.30875 -12.17605 -11.98153 -11.69699 -11.65565 -11.37173 -11.27188 -11.23698 -10.95190 -10.85709 -10.57997 -10.47999 -10.42009 -10.33163 -10.19764 -9.87886 -9.09217 -8.96111 -8.50245 -8.23383 -7.38427 -5.86169 -3.83704 3.39591 3.46919 3.52949 4.04922 4.58515 4.69731 4.73429 4.84378 4.90715 5.00140 5.11526 5.27935 5.36768 5.48056 5.51116 5.54215 5.59453 5.61127 5.73699 5.77974 5.79600 5.93771 5.95511 5.98102 6.02801 6.05070 6.08484 6.10406 6.16841 6.38961 6.52663 6.57350 6.71513 6.78850 6.96666 7.03534 7.31006 7.57696 7.73872 7.90899 8.07120 8.16021 8.61256 9.22279 9.77779 11.25853 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.004340 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.478108 B = 6449.522393 C = 7081.670334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.692 5.692 5 C 0.070 3.930 6 C -0.109 4.109 7 H 0.078 0.922 8 C -0.124 4.124 9 C 0.035 3.965 10 N -0.501 5.501 11 C 0.080 3.920 12 H 0.068 0.932 13 C -0.185 4.185 14 C 0.027 3.973 15 C -0.488 4.488 16 H 0.060 0.940 17 C 0.050 3.950 18 N -0.904 5.904 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.056 3.944 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.338 0.662 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.023 0.977 42 H 0.014 0.986 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -16.827 -2.446 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.322 5.322 5 C -0.059 4.059 6 C -0.128 4.128 7 H 0.097 0.903 8 C -0.162 4.162 9 C -0.093 4.093 10 N -0.223 5.223 11 C -0.029 4.029 12 H 0.086 0.914 13 C -0.244 4.244 14 C -0.010 4.010 15 C -0.526 4.526 16 H 0.078 0.922 17 C -0.149 4.149 18 N -0.545 5.545 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.166 -16.337 -2.045 18.844 hybrid contribution -0.177 0.512 -0.935 1.081 sum -9.343 -15.825 -2.980 18.617 Atomic orbital electron populations 1.21735 0.95670 1.01649 1.01867 1.21504 0.95504 0.96572 1.02455 1.22004 0.87993 0.96747 1.00565 1.60522 1.06973 1.14834 1.49890 1.21944 0.94375 0.88777 1.00795 1.22487 0.94199 0.98439 0.97709 0.90345 1.22743 0.97085 0.99279 0.97075 1.23088 0.95962 0.90562 0.99721 1.63738 1.03616 1.24936 1.30059 1.22027 0.91519 0.96589 0.92743 0.91369 1.22561 1.01675 0.99560 1.00562 1.19247 0.97083 0.88803 0.95861 1.21202 1.45245 0.92722 0.93448 0.92200 1.25001 0.96188 0.98616 0.95121 1.69972 1.50193 1.17970 1.16397 0.86582 0.77386 0.81641 0.82651 1.19789 1.21350 1.21427 1.22741 0.93378 0.93982 0.97170 0.92638 0.92863 0.92592 0.91172 0.92301 0.95445 0.91069 0.84467 0.94840 0.90902 0.91718 0.91363 0.91248 0.93778 0.92567 0.92875 0.93925 0.95840 0.96734 0.93419 0.90916 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.01 6.19 -26.73 -0.17 -1.18 16 3 C 0.06 0.55 5.69 -3.82 -0.02 0.53 16 4 N -0.69 -7.72 6.50 -113.78 -0.74 -8.46 16 5 C 0.07 0.90 5.03 -3.82 -0.02 0.88 16 6 C -0.11 -1.53 3.16 -88.80 -0.28 -1.81 16 7 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 8 C -0.12 -1.62 5.92 -24.59 -0.15 -1.77 16 9 C 0.03 0.54 6.49 -2.30 -0.01 0.52 16 10 N -0.50 -9.72 4.90 -223.29 -1.09 -10.81 16 11 C 0.08 1.65 2.33 -67.71 -0.16 1.50 16 12 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.18 -3.23 8.59 37.15 0.32 -2.92 16 14 C 0.03 0.70 4.28 -27.88 -0.12 0.58 16 15 C -0.49 -13.86 8.82 -34.44 -0.30 -14.16 16 16 H 0.06 1.71 7.75 -52.48 -0.41 1.31 16 17 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 18 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.06 1.01 5.04 -2.84 -0.01 0.99 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 3.47 8.16 -39.29 -0.32 3.15 16 32 H 0.03 0.44 8.00 -51.93 -0.42 0.03 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.66 5.70 -51.92 -0.30 0.37 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.92 6.15 -51.92 -0.32 0.60 16 40 H 0.04 0.66 6.29 -51.93 -0.33 0.33 16 41 H 0.02 0.64 6.41 -51.93 -0.33 0.31 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 1.43 7.82 -51.93 -0.41 1.03 16 45 H 0.06 1.21 4.82 -51.93 -0.25 0.96 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -29.87 343.78 -10.13 -40.00 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.54 Total: -0.26 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.65 Total: -16.19 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -1.10 Total: -46.02 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.87 -10.13 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719085927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.814 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds