Wall clock time and date at job start Mon Mar 30 2020 07:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 N 1.46904 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99966 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46990 * 180.02562 * 5 4 3 7 7 H 1.09007 * 110.62973 * 308.10309 * 6 5 4 8 8 C 1.55138 * 110.70726 * 71.40117 * 6 5 4 9 9 C 1.54905 * 101.65197 * 154.03354 * 8 6 5 10 10 N 1.47844 * 104.80095 * 322.93429 * 9 8 6 11 11 C 1.46895 * 111.00117 * 146.36044 * 10 9 8 12 12 H 1.09004 * 109.47188 * 58.83464 * 11 10 9 13 13 C 1.52992 * 109.47579 * 298.83096 * 11 10 9 14 14 C 1.53009 * 109.46600 * 178.82825 * 11 10 9 15 15 C 1.50697 * 109.47325 * 295.68952 * 14 11 10 16 16 H 1.08005 * 119.99996 * 354.98512 * 15 14 11 17 17 C 1.37870 * 119.99874 * 174.99277 * 15 14 11 18 18 N 1.31519 * 120.00393 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46978 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47195 * 119.99926 * 19 17 15 22 22 H 1.48507 * 109.46786 * 239.99543 * 19 17 15 23 23 C 1.47446 * 108.56222 * 24.09319 * 10 9 8 24 24 H 1.09005 * 109.47566 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47029 * 60.00254 * 1 2 3 26 26 H 1.08999 * 109.47425 * 300.00414 * 1 2 3 27 27 H 1.09006 * 109.47029 * 119.99746 * 2 1 3 28 28 H 1.08999 * 109.47425 * 239.99586 * 2 1 3 29 29 H 1.08997 * 109.47174 * 299.99860 * 3 2 1 30 30 H 1.08999 * 109.47326 * 59.99525 * 3 2 1 31 31 H 1.00897 * 110.99475 * 56.04553 * 4 3 2 32 32 H 1.08997 * 109.47206 * 300.00386 * 5 4 3 33 33 H 1.09007 * 109.46866 * 60.00172 * 5 4 3 34 34 H 1.08999 * 110.98945 * 272.12749 * 8 6 5 35 35 H 1.08999 * 110.98687 * 35.94375 * 8 6 5 36 36 H 1.09003 * 110.37102 * 204.09765 * 9 8 6 37 37 H 1.09009 * 110.46325 * 81.80985 * 9 8 6 38 38 H 1.08996 * 109.47587 * 186.16188 * 13 11 10 39 39 H 1.09010 * 109.46801 * 306.16485 * 13 11 10 40 40 H 1.09001 * 109.47023 * 66.15961 * 13 11 10 41 41 H 1.08995 * 109.47076 * 55.69212 * 14 11 10 42 42 H 1.09004 * 109.46592 * 175.68931 * 14 11 10 43 43 H 0.96991 * 120.00708 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.88530 * 239.60672 * 23 10 9 45 45 H 1.08996 * 109.88701 * 118.42556 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5649 2.7731 0.0000 7 1 5.9320 2.1339 0.8031 8 6 6.1009 2.2952 -1.3751 9 6 7.5053 2.9480 -1.4075 10 7 7.3243 4.2656 -0.7618 11 6 8.5267 4.6545 -0.0129 12 1 9.3801 4.6925 -0.6900 13 6 8.7955 3.6278 1.0891 14 6 8.3125 6.0330 0.6155 15 6 8.1531 7.0623 -0.4737 16 1 8.2803 6.7782 -1.5079 17 6 7.8450 8.3665 -0.1498 18 7 7.6897 8.7124 1.1095 19 14 7.6467 9.6422 -1.4999 20 1 7.8702 9.0031 -2.8215 21 1 6.2747 10.2079 -1.4487 22 1 8.6383 10.7300 -1.3025 23 6 6.1487 4.1960 0.1254 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.8708 0.9162 -0.7805 32 1 3.6863 3.3368 -0.8904 33 1 3.6855 3.3378 0.8896 34 1 6.1746 1.2082 -1.4091 35 1 5.4780 2.6684 -2.1880 36 1 7.8421 3.0727 -2.4367 37 1 8.2189 2.3450 -0.8459 38 1 9.6206 3.9718 1.7128 39 1 7.9015 3.5099 1.7017 40 1 9.0557 2.6703 0.6380 41 1 7.4144 6.0153 1.2329 42 1 9.1733 6.2883 1.2335 43 1 7.4726 9.6298 1.3374 44 1 5.4056 4.9304 -0.1856 45 1 6.4502 4.3839 1.1558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719085927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:43 Heat of formation + Delta-G solvation = -34.653912 kcal Electronic energy + Delta-G solvation = -19481.546628 eV Core-core repulsion = 16725.118139 eV Total energy + Delta-G solvation = -2756.428489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60683 -37.89576 -35.89021 -34.50390 -33.24327 -30.69060 -29.63266 -29.14977 -26.80028 -25.16369 -24.27927 -22.87750 -22.15097 -21.10256 -20.05668 -18.38315 -17.73929 -17.04948 -16.50954 -16.08023 -15.67516 -15.38112 -15.05678 -14.71569 -14.53776 -14.19163 -14.08448 -13.65297 -13.38898 -13.27387 -13.19084 -12.88765 -12.78028 -12.63432 -12.58297 -12.41536 -12.29256 -12.05947 -11.70306 -11.62555 -11.61403 -11.47297 -11.40875 -11.10250 -10.98033 -10.48859 -9.40459 -8.86983 -8.10763 -6.15796 1.39936 1.40683 1.54224 2.46546 3.11564 3.20546 3.34120 3.73471 3.80405 4.06195 4.09749 4.20478 4.22756 4.41173 4.43704 4.48787 4.51949 4.58243 4.61622 4.63927 4.70660 4.81783 4.83857 4.88823 4.94938 5.00631 5.07135 5.13311 5.18832 5.19833 5.24612 5.31101 5.31653 5.39859 5.46484 5.48389 5.71526 5.89670 6.04082 6.32808 6.40077 6.48611 6.56443 6.97898 7.49930 9.01374 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.004340 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.478108 B = 6449.522393 C = 7081.670334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.055 3.945 4 N -0.691 5.691 5 C 0.078 3.922 6 C -0.094 4.094 7 H 0.082 0.918 8 C -0.111 4.111 9 C 0.033 3.967 10 N -0.527 5.527 11 C 0.088 3.912 12 H 0.062 0.938 13 C -0.173 4.173 14 C 0.033 3.967 15 C -0.499 4.499 16 H 0.055 0.945 17 C -0.005 4.005 18 N -0.940 5.940 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.281 1.281 23 C 0.059 3.941 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.346 0.654 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.071 0.929 41 H -0.001 1.001 42 H -0.011 1.011 43 H 0.259 0.741 44 H 0.046 0.954 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -18.681 -3.836 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.322 5.322 5 C -0.052 4.052 6 C -0.113 4.113 7 H 0.100 0.900 8 C -0.149 4.149 9 C -0.094 4.094 10 N -0.250 5.250 11 C -0.020 4.020 12 H 0.080 0.920 13 C -0.232 4.232 14 C -0.004 4.004 15 C -0.537 4.537 16 H 0.073 0.927 17 C -0.201 4.201 18 N -0.582 5.582 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.007 0.993 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.679 -18.213 -3.447 20.911 hybrid contribution -0.018 1.097 -0.488 1.201 sum -9.697 -17.116 -3.935 20.062 Atomic orbital electron populations 1.21727 0.94836 1.02338 1.01899 1.21455 0.96179 0.95235 1.02585 1.22048 0.87138 0.97941 1.00242 1.60487 1.07822 1.13531 1.50376 1.21768 0.93518 0.89814 1.00073 1.22313 0.94815 0.95512 0.98694 0.89950 1.22702 0.95198 1.00919 0.96034 1.23180 0.97866 0.88880 0.99507 1.63585 1.03158 1.27947 1.30312 1.21709 0.92054 0.94775 0.93489 0.91962 1.22415 1.01590 0.99745 0.99455 1.19107 0.94693 0.91717 0.94871 1.21491 1.44828 0.93650 0.93730 0.92693 1.25855 0.95954 1.00894 0.97431 1.70098 1.51143 1.18555 1.18417 0.85513 0.77460 0.78895 0.79842 1.19001 1.20878 1.20686 1.22601 0.92687 0.96124 0.95562 0.91631 0.92692 0.92743 0.91591 0.91562 0.95399 0.91803 0.83518 0.95373 0.92019 0.88552 0.91309 0.90916 0.92560 0.92691 0.93008 0.91049 0.98274 0.99291 0.93266 0.93570 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.69 6.19 30.59 0.19 -1.50 16 3 C 0.06 1.01 5.69 86.30 0.49 1.50 16 4 N -0.69 -14.07 6.50 -513.88 -3.34 -17.41 16 5 C 0.08 1.93 5.03 86.30 0.43 2.36 16 6 C -0.09 -2.50 3.16 -9.62 -0.03 -2.53 16 7 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 8 C -0.11 -2.59 5.92 31.98 0.19 -2.40 16 9 C 0.03 0.95 6.49 86.77 0.56 1.51 16 10 N -0.53 -20.33 4.90 -860.36 -4.21 -24.54 16 11 C 0.09 3.70 2.33 44.92 0.10 3.80 16 12 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.17 -5.92 8.59 71.98 0.62 -5.30 16 14 C 0.03 1.78 4.28 29.85 0.13 1.90 16 15 C -0.50 -29.02 8.82 25.60 0.23 -28.80 16 16 H 0.05 3.19 7.75 -2.91 -0.02 3.17 16 17 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 18 N -0.94 -58.58 13.29 21.45 0.28 -58.29 16 19 Si 0.96 46.30 29.54 68.60 2.03 48.32 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.06 2.17 5.04 86.64 0.44 2.60 16 24 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.35 6.09 8.16 -89.70 -0.73 5.36 16 32 H 0.03 0.72 8.00 -2.39 -0.02 0.71 16 33 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.63 7.94 -2.39 -0.02 1.62 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.50 5.70 -2.38 -0.01 1.49 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.77 6.15 -2.38 -0.01 1.76 16 40 H 0.07 2.03 6.29 -2.39 -0.02 2.01 16 41 H 0.00 -0.06 6.41 -2.39 -0.02 -0.08 16 42 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.05 1.90 7.82 -2.38 -0.02 1.89 16 45 H 0.04 1.68 4.82 -2.39 -0.01 1.67 16 Total: -1.00 -65.21 343.78 -0.52 -65.74 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.20 Total: 14.05 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 4.52 Total: -27.86 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -7.27 Total: -100.24 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -65.21 -0.52 -65.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719085927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.082 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds