Wall clock time and date at job start Mon Mar 30 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48563 * 111.00147 * 2 1 4 4 C 1.54378 * 104.59704 * 159.03904 * 3 2 1 5 5 H 1.09005 * 110.40551 * 95.08330 * 4 3 2 6 6 N 1.46900 * 110.32703 * 217.25193 * 4 3 2 7 7 C 1.46893 * 111.00119 * 279.96962 * 6 4 3 8 8 C 1.52995 * 109.47481 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47432 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46942 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46969 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00246 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00259 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00144 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46777 * 90.00755 * 15 13 11 17 17 H 1.48502 * 109.47012 * 210.00108 * 15 13 11 18 18 H 1.48492 * 109.47320 * 330.00481 * 15 13 11 19 19 C 1.54263 * 105.05960 * 336.15093 * 4 3 2 20 20 C 1.52997 * 110.32399 * 118.89207 * 19 4 3 21 21 C 1.53002 * 110.32493 * 241.10008 * 19 4 3 22 22 C 1.48555 * 111.00109 * 115.42095 * 2 1 3 23 23 H 1.09000 * 109.46807 * 304.58156 * 1 2 3 24 24 H 1.08999 * 109.47165 * 64.58045 * 1 2 3 25 25 H 1.08997 * 109.47105 * 184.58471 * 1 2 3 26 26 H 1.09006 * 110.40761 * 40.25944 * 3 2 1 27 27 H 1.08997 * 110.41271 * 277.82287 * 3 2 1 28 28 H 1.00898 * 110.99353 * 156.01181 * 6 4 3 29 29 H 1.09003 * 109.47339 * 300.00255 * 7 6 4 30 30 H 1.09007 * 109.47299 * 59.99517 * 7 6 4 31 31 H 1.08996 * 109.47471 * 300.00230 * 8 7 6 32 32 H 1.08999 * 109.46797 * 59.99675 * 8 7 6 33 33 H 1.08995 * 109.47336 * 300.00235 * 9 8 7 34 34 H 1.08999 * 109.46471 * 60.00437 * 9 8 7 35 35 H 1.09002 * 109.47464 * 299.99927 * 10 9 8 36 36 H 1.08999 * 109.47049 * 60.00330 * 10 9 8 37 37 H 0.97005 * 120.00125 * 179.97438 * 14 13 11 38 38 H 1.09010 * 109.47208 * 60.00131 * 20 19 4 39 39 H 1.09004 * 109.47088 * 179.97438 * 20 19 4 40 40 H 1.08996 * 109.47351 * 299.99924 * 20 19 4 41 41 H 1.09007 * 109.46737 * 53.72192 * 21 19 4 42 42 H 1.08989 * 109.47178 * 173.72057 * 21 19 4 43 43 H 1.08998 * 109.47123 * 293.72785 * 21 19 4 44 44 H 1.09002 * 110.41290 * 82.18087 * 22 2 1 45 45 H 1.09003 * 110.51616 * 319.78668 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2502 0.5344 5 1 4.1496 1.1754 -0.2924 6 7 3.7808 2.3949 1.3909 7 6 4.1485 3.5659 0.5838 8 6 4.4919 4.7353 1.5086 9 6 4.8755 5.9548 0.6679 10 6 5.2195 7.1240 1.5929 11 6 5.5967 8.3253 0.7649 12 1 5.5912 8.2614 -0.3133 13 6 5.9479 9.5064 1.3836 14 7 5.9542 9.5843 2.6964 15 14 6.4161 10.9952 0.3572 16 1 5.2010 11.7979 0.0665 17 1 7.3909 11.8270 1.1076 18 1 7.0285 10.5445 -0.9183 19 6 3.4433 -0.0539 1.3585 20 6 4.4329 -1.0581 0.7641 21 6 3.7949 0.2399 2.8183 22 6 2.0014 -0.5953 1.2526 23 1 -0.3633 0.5833 0.8461 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0243 0.0821 26 1 1.4098 2.0212 0.6602 27 1 2.0079 1.7917 -1.0120 28 1 4.5165 2.1570 2.0391 29 1 5.0136 3.3244 -0.0338 30 1 3.3111 3.8433 -0.0566 31 1 3.6266 4.9767 2.1258 32 1 5.3291 4.4582 2.1492 33 1 5.7410 5.7132 0.0510 34 1 4.0385 6.2321 0.0272 35 1 4.3543 7.3659 2.2101 36 1 6.0567 6.8464 2.2334 37 1 6.2016 10.4151 3.1318 38 1 5.4355 -0.6303 0.7753 39 1 4.4221 -1.9730 1.3566 40 1 4.1467 -1.2862 -0.2625 41 1 3.1268 1.0095 3.2050 42 1 3.6824 -0.6691 3.4091 43 1 4.8256 0.5887 2.8807 44 1 2.0079 -1.6832 1.1837 45 1 1.4105 -0.2731 2.1100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722270837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:34 Heat of formation + Delta-G solvation = -16.921784 kcal Electronic energy + Delta-G solvation = -19128.049202 eV Core-core repulsion = 16372.389636 eV Total energy + Delta-G solvation = -2755.659566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03972 -36.22262 -34.65493 -33.50779 -31.91323 -29.30994 -28.04858 -27.31420 -26.63005 -24.53968 -23.31898 -21.73017 -20.76517 -20.06700 -18.87511 -16.27092 -16.10999 -15.91258 -15.51339 -14.73680 -14.52032 -14.45828 -14.29789 -13.60125 -13.41028 -13.09731 -12.78342 -12.52404 -12.30557 -12.22969 -11.93050 -11.73565 -11.59856 -11.46992 -11.30768 -11.06905 -10.91046 -10.78138 -10.64230 -10.49595 -10.43040 -10.38128 -9.60818 -9.23347 -8.98309 -8.70285 -8.37282 -8.30817 -5.96279 -3.98410 3.33827 3.39773 3.43391 3.75955 4.27637 4.35007 4.40869 4.49563 4.75910 5.03381 5.13133 5.21537 5.24693 5.25108 5.39113 5.42213 5.44015 5.46968 5.53547 5.55838 5.64121 5.71894 5.73115 5.81161 5.86757 5.93654 5.96614 6.04558 6.18371 6.18819 6.27463 6.53745 6.59831 6.79216 6.85051 6.99332 7.10147 7.26870 7.44278 7.72894 7.88954 8.04978 8.47949 9.09162 9.65368 11.15084 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.038186 B = 0.003159 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.076502 B = 8861.559567 C = 9166.976562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.041 3.959 4 C 0.089 3.911 5 H 0.052 0.948 6 N -0.686 5.686 7 C 0.058 3.942 8 C -0.115 4.115 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.069 4.069 20 C -0.136 4.136 21 C -0.140 4.140 22 C 0.044 3.956 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.344 0.656 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 -22.572 -2.567 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.241 5.241 3 C -0.088 4.088 4 C -0.022 4.022 5 H 0.070 0.930 6 N -0.320 5.320 7 C -0.071 4.071 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.070 4.070 20 C -0.193 4.193 21 C -0.198 4.198 22 C -0.084 4.084 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.165 0.835 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.851 -22.555 -2.828 24.049 hybrid contribution 0.807 1.146 -0.132 1.408 sum -7.044 -21.409 -2.961 22.732 Atomic orbital electron populations 1.22494 0.88062 1.01708 1.01206 1.65345 1.08108 1.15829 1.34789 1.23176 0.95007 0.89675 1.00927 1.22264 0.96143 0.89587 0.94185 0.93008 1.60778 1.47317 1.04658 1.19214 1.22112 0.98759 0.90524 0.95701 1.21625 1.01058 0.94376 0.98193 1.21587 0.99529 0.94962 0.98622 1.19088 0.96612 0.91414 0.94470 1.21297 1.45255 0.96196 0.93076 0.92780 1.25036 0.95764 0.98859 0.94893 1.69971 1.48976 1.26657 1.07989 0.86610 0.78307 0.82883 0.80298 1.20682 1.21245 1.19907 1.21399 0.95086 0.94624 0.95894 1.21856 0.98116 0.98167 1.01165 1.21817 1.01895 1.01757 0.94320 1.23187 0.94267 0.99694 0.91220 0.95197 0.91282 0.91487 0.92272 0.90544 0.83478 0.95557 0.91399 0.91743 0.92838 0.93691 0.93477 0.96648 0.96752 0.93064 0.92824 0.92594 0.91951 0.90837 0.92788 0.92457 0.90385 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.07 0.57 0.70 16 2 N -0.52 -5.36 5.66 -238.23 -1.35 -6.71 16 3 C 0.04 0.46 5.80 -2.18 -0.01 0.45 16 4 C 0.09 0.99 2.99 -66.33 -0.20 0.80 16 5 H 0.05 0.62 7.53 -51.93 -0.39 0.22 16 6 N -0.69 -8.50 5.32 -105.27 -0.56 -9.06 16 7 C 0.06 0.82 5.52 -3.83 -0.02 0.80 16 8 C -0.11 -1.97 5.47 -26.73 -0.15 -2.12 16 9 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.07 -0.65 1.03 -153.12 -0.16 -0.81 16 20 C -0.14 -1.16 8.23 37.16 0.31 -0.85 16 21 C -0.14 -1.25 7.15 37.16 0.27 -0.99 16 22 C 0.04 0.42 5.58 -2.18 -0.01 0.41 16 23 H 0.03 0.26 7.97 -51.93 -0.41 -0.15 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.34 4.04 6.18 -39.29 -0.24 3.80 16 29 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.07 0.98 7.86 -51.92 -0.41 0.57 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 42 H 0.05 0.42 8.14 -51.94 -0.42 0.00 16 43 H 0.06 0.50 7.06 -51.93 -0.37 0.13 16 44 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 45 H 0.05 0.45 7.69 -51.93 -0.40 0.05 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -30.16 348.64 -9.92 -40.08 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.89 Total: -2.33 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.09 Total: -17.50 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -1.17 Total: -42.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.16 -9.92 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.158 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds