Wall clock time and date at job start Mon Mar 30 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48563 * 111.00147 * 2 1 4 4 C 1.54378 * 104.59704 * 159.03904 * 3 2 1 5 5 H 1.09005 * 110.40551 * 95.08330 * 4 3 2 6 6 N 1.46900 * 110.32703 * 217.25193 * 4 3 2 7 7 C 1.46893 * 111.00119 * 279.96962 * 6 4 3 8 8 C 1.52995 * 109.47481 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47432 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46942 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46969 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00246 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00259 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00144 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46777 * 90.00755 * 15 13 11 17 17 H 1.48502 * 109.47012 * 210.00108 * 15 13 11 18 18 H 1.48492 * 109.47320 * 330.00481 * 15 13 11 19 19 C 1.54263 * 105.05960 * 336.15093 * 4 3 2 20 20 C 1.52997 * 110.32399 * 118.89207 * 19 4 3 21 21 C 1.53002 * 110.32493 * 241.10008 * 19 4 3 22 22 C 1.48555 * 111.00109 * 115.42095 * 2 1 3 23 23 H 1.09000 * 109.46807 * 304.58156 * 1 2 3 24 24 H 1.08999 * 109.47165 * 64.58045 * 1 2 3 25 25 H 1.08997 * 109.47105 * 184.58471 * 1 2 3 26 26 H 1.09006 * 110.40761 * 40.25944 * 3 2 1 27 27 H 1.08997 * 110.41271 * 277.82287 * 3 2 1 28 28 H 1.00898 * 110.99353 * 156.01181 * 6 4 3 29 29 H 1.09003 * 109.47339 * 300.00255 * 7 6 4 30 30 H 1.09007 * 109.47299 * 59.99517 * 7 6 4 31 31 H 1.08996 * 109.47471 * 300.00230 * 8 7 6 32 32 H 1.08999 * 109.46797 * 59.99675 * 8 7 6 33 33 H 1.08995 * 109.47336 * 300.00235 * 9 8 7 34 34 H 1.08999 * 109.46471 * 60.00437 * 9 8 7 35 35 H 1.09002 * 109.47464 * 299.99927 * 10 9 8 36 36 H 1.08999 * 109.47049 * 60.00330 * 10 9 8 37 37 H 0.97005 * 120.00125 * 179.97438 * 14 13 11 38 38 H 1.09010 * 109.47208 * 60.00131 * 20 19 4 39 39 H 1.09004 * 109.47088 * 179.97438 * 20 19 4 40 40 H 1.08996 * 109.47351 * 299.99924 * 20 19 4 41 41 H 1.09007 * 109.46737 * 53.72192 * 21 19 4 42 42 H 1.08989 * 109.47178 * 173.72057 * 21 19 4 43 43 H 1.08998 * 109.47123 * 293.72785 * 21 19 4 44 44 H 1.09002 * 110.41290 * 82.18087 * 22 2 1 45 45 H 1.09003 * 110.51616 * 319.78668 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2502 0.5344 5 1 4.1496 1.1754 -0.2924 6 7 3.7808 2.3949 1.3909 7 6 4.1485 3.5659 0.5838 8 6 4.4919 4.7353 1.5086 9 6 4.8755 5.9548 0.6679 10 6 5.2195 7.1240 1.5929 11 6 5.5967 8.3253 0.7649 12 1 5.5912 8.2614 -0.3133 13 6 5.9479 9.5064 1.3836 14 7 5.9542 9.5843 2.6964 15 14 6.4161 10.9952 0.3572 16 1 5.2010 11.7979 0.0665 17 1 7.3909 11.8270 1.1076 18 1 7.0285 10.5445 -0.9183 19 6 3.4433 -0.0539 1.3585 20 6 4.4329 -1.0581 0.7641 21 6 3.7949 0.2399 2.8183 22 6 2.0014 -0.5953 1.2526 23 1 -0.3633 0.5833 0.8461 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0243 0.0821 26 1 1.4098 2.0212 0.6602 27 1 2.0079 1.7917 -1.0120 28 1 4.5165 2.1570 2.0391 29 1 5.0136 3.3244 -0.0338 30 1 3.3111 3.8433 -0.0566 31 1 3.6266 4.9767 2.1258 32 1 5.3291 4.4582 2.1492 33 1 5.7410 5.7132 0.0510 34 1 4.0385 6.2321 0.0272 35 1 4.3543 7.3659 2.2101 36 1 6.0567 6.8464 2.2334 37 1 6.2016 10.4151 3.1318 38 1 5.4355 -0.6303 0.7753 39 1 4.4221 -1.9730 1.3566 40 1 4.1467 -1.2862 -0.2625 41 1 3.1268 1.0095 3.2050 42 1 3.6824 -0.6691 3.4091 43 1 4.8256 0.5887 2.8807 44 1 2.0079 -1.6832 1.1837 45 1 1.4105 -0.2731 2.1100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722270837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:34 Heat of formation + Delta-G solvation = -36.121804 kcal Electronic energy + Delta-G solvation = -19128.881777 eV Core-core repulsion = 16372.389636 eV Total energy + Delta-G solvation = -2756.492142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86545 -37.47799 -35.92962 -34.94896 -33.62244 -30.62382 -29.20015 -28.09658 -27.61945 -26.12954 -24.34970 -23.09803 -21.81347 -21.73602 -19.72214 -18.42971 -17.10306 -16.88427 -16.52398 -16.43940 -15.88192 -15.42486 -15.27333 -14.68709 -14.40386 -14.19262 -14.13402 -13.78513 -13.53318 -13.47868 -12.99092 -12.89879 -12.81346 -12.63575 -12.50454 -12.34316 -12.26071 -12.10397 -12.07734 -11.72494 -11.53153 -11.45642 -11.36704 -11.28930 -10.93758 -10.55757 -9.50810 -9.38159 -8.20287 -6.31816 1.39200 1.40944 1.52134 2.40593 2.90872 3.12371 3.39471 3.52996 3.60338 3.99315 4.11352 4.21481 4.28532 4.38062 4.41907 4.48731 4.53140 4.55892 4.64081 4.70843 4.77990 4.79952 4.83926 4.87490 4.93636 4.95689 5.00418 5.04254 5.14098 5.20790 5.23851 5.27383 5.33910 5.35899 5.47666 5.54710 5.77487 5.77985 5.86654 6.02370 6.14320 6.25653 6.46618 6.85727 7.37519 8.91604 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.038186 B = 0.003159 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.076502 B = 8861.559567 C = 9166.976562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.042 3.958 4 C 0.088 3.912 5 H 0.048 0.952 6 N -0.686 5.686 7 C 0.070 3.930 8 C -0.103 4.103 9 C -0.097 4.097 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.059 0.941 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.067 4.067 20 C -0.131 4.131 21 C -0.137 4.137 22 C 0.046 3.954 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.349 0.651 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.049 0.951 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -23.529 -3.565 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.086 4.086 4 C -0.022 4.022 5 H 0.066 0.934 6 N -0.321 5.321 7 C -0.059 4.059 8 C -0.141 4.141 9 C -0.135 4.135 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.068 4.068 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.082 4.082 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.171 0.829 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.785 -23.533 -3.832 25.082 hybrid contribution 0.758 1.417 0.217 1.621 sum -7.027 -22.117 -3.615 23.486 Atomic orbital electron populations 1.22540 0.87134 1.02606 1.01217 1.65360 1.09093 1.14963 1.35378 1.23107 0.94988 0.90211 1.00338 1.22293 0.95835 0.89904 0.94170 0.93430 1.60725 1.47423 1.04670 1.19248 1.21869 0.98900 0.90124 0.94985 1.21441 1.00598 0.94079 0.98017 1.21398 0.99789 0.94402 0.97935 1.19015 0.94475 0.93231 0.94644 1.21751 1.45550 0.97403 0.93654 0.92242 1.26023 0.95466 1.02372 0.96173 1.70106 1.49688 1.27766 1.09905 0.85432 0.78265 0.78519 0.78742 1.19725 1.20631 1.18684 1.21412 0.95571 0.93852 0.95918 1.21813 0.97645 0.98402 1.00976 1.21774 1.01588 1.02007 0.94076 1.23224 0.93991 1.00327 0.90699 0.95546 0.91019 0.90060 0.93691 0.90908 0.82948 0.95056 0.91482 0.92695 0.92785 0.93164 0.93206 0.99300 0.99155 0.92762 0.92862 0.91177 0.92507 0.92250 0.91352 0.92258 0.89128 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 127.69 1.22 1.44 16 2 N -0.52 -10.17 5.66 -907.61 -5.14 -15.31 16 3 C 0.04 0.93 5.80 86.45 0.50 1.43 16 4 C 0.09 1.88 2.99 45.81 0.14 2.02 16 5 H 0.05 1.07 7.53 -2.38 -0.02 1.05 16 6 N -0.69 -16.41 5.32 -486.96 -2.59 -19.01 16 7 C 0.07 1.95 5.52 86.30 0.48 2.42 16 8 C -0.10 -3.55 5.47 30.59 0.17 -3.38 16 9 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 10 C 0.02 1.28 4.97 29.85 0.15 1.43 16 11 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 15 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 C -0.07 -1.15 1.03 -51.28 -0.05 -1.20 16 20 C -0.13 -1.96 8.23 71.98 0.59 -1.37 16 21 C -0.14 -2.22 7.15 71.98 0.51 -1.71 16 22 C 0.05 0.78 5.58 86.45 0.48 1.26 16 23 H 0.03 0.44 7.97 -2.39 -0.02 0.42 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 1.11 7.82 -2.38 -0.02 1.09 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.35 7.82 6.18 -89.70 -0.55 7.26 16 29 H 0.03 0.84 8.10 -2.39 -0.02 0.83 16 30 H 0.07 1.88 7.86 -2.38 -0.02 1.86 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.15 7.53 -2.38 -0.02 1.13 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.94 7.06 -2.39 -0.02 0.92 16 44 H 0.09 1.33 7.86 -2.39 -0.02 1.31 16 45 H 0.04 0.78 7.69 -2.39 -0.02 0.76 16 Total: -1.00 -64.39 348.64 -0.02 -64.41 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.35 Total: 13.73 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 5.04 Total: -33.03 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -7.44 Total: -92.13 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.39 -0.02 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722270837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.288 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds