Wall clock time and date at job start Mon Mar 30 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47126 * 240.00597 * 2 1 3 5 5 C 1.52994 * 109.47012 * 175.00138 * 4 2 1 6 6 N 1.46906 * 109.46817 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99973 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46808 * 325.00209 * 7 6 5 9 9 C 1.53000 * 109.47120 * 84.99803 * 7 6 5 10 10 C 1.50694 * 109.47066 * 204.99831 * 7 6 5 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 7 6 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 N 1.46898 * 109.47434 * 120.00764 * 2 1 3 19 19 C 1.46849 * 110.99925 * 59.20559 * 18 2 1 20 20 C 1.53037 * 109.52127 * 174.16385 * 19 18 2 21 21 C 1.53121 * 109.27770 * 59.18187 * 20 19 18 22 22 C 1.53121 * 109.15989 * 302.34166 * 21 20 19 23 23 C 1.46848 * 110.99685 * 295.00022 * 18 2 1 24 24 H 1.09005 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46950 * 299.99656 * 1 2 3 26 26 H 1.08998 * 109.47355 * 59.99850 * 1 2 3 27 27 H 1.09001 * 109.47146 * 54.99895 * 4 2 1 28 28 H 1.09007 * 109.46637 * 294.99957 * 4 2 1 29 29 H 1.08993 * 109.47410 * 60.00199 * 5 4 2 30 30 H 1.08998 * 109.47442 * 299.99473 * 5 4 2 31 31 H 1.00894 * 111.00400 * 56.04110 * 6 5 4 32 32 H 1.09000 * 109.47156 * 59.99749 * 9 7 6 33 33 H 1.08997 * 109.47359 * 180.02562 * 9 7 6 34 34 H 1.09007 * 109.47356 * 300.00024 * 9 7 6 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46230 * 294.17933 * 19 18 2 37 37 H 1.08996 * 109.46358 * 54.15500 * 19 18 2 38 38 H 1.09000 * 109.50584 * 299.23978 * 20 19 18 39 39 H 1.08996 * 109.53857 * 179.13883 * 20 19 18 40 40 H 1.09005 * 109.52441 * 182.44154 * 21 20 19 41 41 H 1.08996 * 109.57773 * 62.28407 * 21 20 19 42 42 H 1.09000 * 109.50384 * 297.71663 * 22 21 20 43 43 H 1.08999 * 109.53208 * 177.61377 * 22 21 20 44 44 H 1.09005 * 109.46325 * 305.84957 * 23 18 2 45 45 H 1.09003 * 109.46689 * 65.83162 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 7 4.0544 -1.3051 -2.5136 7 6 5.5179 -1.2215 -2.6092 8 1 5.8526 -0.2577 -2.2255 9 6 6.1479 -2.3455 -1.7841 10 6 5.9360 -1.3613 -4.0502 11 1 5.1893 -1.4989 -4.8183 12 6 7.2720 -1.3146 -4.3881 13 7 8.1813 -1.1475 -3.4528 14 14 7.7902 -1.4886 -6.1743 15 1 9.2697 -1.4040 -6.2709 16 1 7.3339 -2.8016 -6.6965 17 1 7.1792 -0.3977 -6.9755 18 7 2.0197 -0.6926 1.1993 19 6 1.5334 -2.0776 1.2426 20 6 2.1777 -2.8091 2.4223 21 6 1.8222 -2.0828 3.7226 22 6 2.2966 -0.6297 3.6324 23 6 1.6489 0.0386 2.4176 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6054 -0.2616 -2.1371 28 1 1.7516 -1.7715 -1.2057 29 1 3.9994 -1.0728 -0.4262 30 1 3.8532 0.4370 -1.3574 31 1 3.6165 -0.9395 -3.3459 32 1 5.8131 -3.3093 -2.1676 33 1 7.2338 -2.2833 -1.8546 34 1 5.8454 -2.2444 -0.7417 35 1 9.1212 -1.1151 -3.6904 36 1 0.4501 -2.0785 1.3625 37 1 1.7964 -2.5840 0.3140 38 1 3.2603 -2.8206 2.2962 39 1 1.8053 -3.8327 2.4639 40 1 2.3146 -2.5752 4.5613 41 1 0.7425 -2.1051 3.8700 42 1 3.3811 -0.6069 3.5252 43 1 2.0090 -0.0956 4.5380 44 1 1.9957 1.0693 2.3423 45 1 0.5650 0.0276 2.5321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381123708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:32 Heat of formation + Delta-G solvation = -16.826974 kcal Electronic energy + Delta-G solvation = -19801.790491 eV Core-core repulsion = 17046.135036 eV Total energy + Delta-G solvation = -2755.655455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.52545 -36.24334 -34.85793 -32.56584 -30.96877 -30.38333 -29.05449 -26.73971 -25.09483 -24.34672 -23.12261 -21.91109 -20.34374 -19.59134 -19.05013 -16.44231 -16.35956 -15.10994 -14.81495 -14.56400 -14.35327 -14.20859 -14.00428 -13.73370 -13.30969 -12.92689 -12.73052 -12.32456 -12.24040 -11.98090 -11.85298 -11.48364 -11.29855 -10.96656 -10.82727 -10.75905 -10.71906 -10.63282 -10.48055 -10.31559 -10.17021 -10.06100 -9.94852 -9.69987 -8.72748 -8.40010 -8.12477 -7.11347 -5.95533 -4.01763 3.34889 3.39061 3.41960 3.93962 4.45251 4.75364 4.79178 4.86583 4.94839 5.16720 5.25043 5.29763 5.34162 5.35547 5.49638 5.55317 5.63683 5.66790 5.66994 5.79606 5.83629 5.89520 5.95766 5.97868 6.07501 6.12536 6.16892 6.28732 6.33523 6.40278 6.68506 6.84488 7.03268 7.23776 7.24706 7.26456 7.36309 7.63590 7.85629 8.01103 8.37596 8.52094 8.80681 9.10545 9.63780 11.10692 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.032314 B = 0.004246 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.302576 B = 6592.214527 C = 7029.271638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.080 0.920 4 C -0.109 4.109 5 C 0.069 3.931 6 N -0.692 5.692 7 C 0.213 3.787 8 H -0.001 1.001 9 C -0.122 4.122 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.896 3.104 15 H -0.288 1.288 16 H -0.277 1.277 17 H -0.278 1.278 18 N -0.524 5.524 19 C 0.050 3.950 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.117 4.117 23 C 0.055 3.945 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.325 0.675 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 1.118 12.365 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.061 4.061 6 N -0.323 5.323 7 C 0.105 3.895 8 H 0.016 0.984 9 C -0.180 4.180 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.213 1.213 16 H -0.202 1.202 17 H -0.204 1.204 18 N -0.249 5.249 19 C -0.077 4.077 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.142 0.858 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.874 0.497 12.670 18.795 hybrid contribution -0.446 0.914 -1.152 1.537 sum -14.319 1.411 11.517 18.431 Atomic orbital electron populations 1.22465 0.98053 1.02041 1.01804 1.21733 0.91966 0.98425 0.90518 0.90221 1.21691 0.97193 1.00654 0.95170 1.21807 0.92874 0.95573 0.95821 1.60740 1.09464 1.58658 1.03421 1.19055 0.81376 0.93721 0.95340 0.98380 1.21683 1.02907 0.98464 0.94990 1.21265 0.92155 1.49859 0.92341 0.92396 1.24924 0.96612 0.95150 0.97351 1.69901 1.00874 1.50023 1.32125 0.86604 0.77255 0.78635 0.85130 1.21338 1.20237 1.20399 1.62088 1.59468 1.01927 1.01379 1.22168 0.96445 0.89439 0.99685 1.21589 1.02095 0.98045 0.93853 1.21566 1.00347 0.95964 0.97848 1.21585 1.01648 0.95551 0.96732 1.22068 0.97362 0.97713 0.90169 0.92402 0.92936 0.92124 0.92301 0.91253 0.90695 0.97101 0.85850 0.95194 0.90341 0.97585 0.92964 0.95228 0.89717 0.90806 0.91879 0.92123 0.92733 0.90938 0.92033 0.91104 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.50 37.16 0.32 -1.63 16 2 C 0.08 1.04 2.35 -67.71 -0.16 0.88 16 3 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 4 C -0.11 -1.61 4.76 -26.73 -0.13 -1.73 16 5 C 0.07 1.30 5.37 -3.82 -0.02 1.28 16 6 N -0.69 -15.37 6.30 -107.95 -0.68 -16.05 16 7 C 0.21 5.61 2.60 -68.87 -0.18 5.43 16 8 H 0.00 -0.04 7.80 -51.93 -0.40 -0.45 16 9 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 10 C -0.52 -14.61 8.59 -34.44 -0.30 -14.90 16 11 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -26.07 11.32 55.43 0.63 -25.45 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.52 -6.66 4.10 -226.69 -0.93 -7.59 16 19 C 0.05 0.61 4.64 -3.83 -0.02 0.59 16 20 C -0.12 -1.31 6.09 -26.65 -0.16 -1.48 16 21 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 22 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 23 C 0.05 0.60 5.02 -3.83 -0.02 0.58 16 24 H 0.06 0.61 6.52 -51.93 -0.34 0.27 16 25 H 0.05 0.52 6.65 -51.93 -0.35 0.17 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.05 6.05 -51.92 -0.31 0.73 16 29 H 0.07 1.52 7.05 -51.93 -0.37 1.15 16 30 H 0.01 0.21 8.05 -51.93 -0.42 -0.20 16 31 H 0.33 7.02 8.22 -39.30 -0.32 6.70 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 34 H 0.01 0.12 7.46 -51.93 -0.39 -0.26 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.03 0.33 6.62 -51.93 -0.34 -0.01 16 37 H 0.08 1.14 5.93 -51.93 -0.31 0.83 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 45 H 0.03 0.31 6.73 -51.93 -0.35 -0.04 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -28.88 335.62 -10.08 -38.96 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.39 Total: 3.28 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.74 Total: -14.84 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.98 Total: -49.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.88 -10.08 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381123708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.135 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds