Wall clock time and date at job start Mon Mar 30 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48499 * 109.46990 * 239.99966 * 3 2 1 5 5 H 1.48499 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47016 * 119.99970 * 3 2 1 7 7 C 1.38845 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 190.69480 * 7 2 1 9 9 N 1.37216 * 119.99901 * 10.97676 * 7 2 1 10 10 C 1.37002 * 125.09091 * 20.82523 * 9 7 2 11 11 C 1.34300 * 109.93413 * 179.81451 * 10 9 7 12 12 C 1.46671 * 107.04526 * 0.43738 * 11 10 9 13 13 C 1.39512 * 133.96562 * 179.76251 * 12 11 10 14 14 C 1.37777 * 119.65418 * 179.97438 * 13 12 11 15 15 C 1.50703 * 119.81569 * 179.97438 * 14 13 12 16 16 F 1.39901 * 109.46830 * 90.00260 * 15 14 13 17 17 F 1.39901 * 109.47321 * 209.99810 * 15 14 13 18 18 F 1.39897 * 109.47664 * 330.00251 * 15 14 13 19 19 C 1.38744 * 120.36933 * 0.02562 * 14 13 12 20 20 C 1.37905 * 120.64266 * 0.02562 * 19 14 13 21 21 C 1.38114 * 125.09102 * 201.13112 * 9 7 2 22 22 H 0.97002 * 119.99698 * 0.02562 * 1 2 3 23 23 H 1.08004 * 125.03144 * 359.97438 * 10 9 7 24 24 H 1.07993 * 126.47976 * 180.16885 * 11 10 9 25 25 H 1.08003 * 120.17388 * 359.97438 * 13 12 11 26 26 H 1.07994 * 119.68350 * 179.97438 * 19 14 13 27 27 H 1.07996 * 120.03865 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0087 -1.2024 0.0005 8 1 3.0746 -1.2105 0.1741 9 7 1.3414 -2.3800 -0.2252 10 6 0.1250 -2.4895 -0.8460 11 6 -0.2424 -3.7797 -0.9090 12 6 0.8203 -4.5612 -0.2677 13 6 1.0096 -5.9218 -0.0244 14 6 2.1509 -6.3466 0.6201 15 6 2.3589 -7.8155 0.8853 16 9 3.0339 -8.3934 -0.1953 17 9 3.1182 -7.9763 2.0492 18 9 1.1179 -8.4404 1.0480 19 6 3.1092 -5.4297 1.0272 20 6 2.9356 -4.0815 0.7947 21 6 1.7927 -3.6318 0.1447 22 1 -0.4850 0.8401 -0.0004 23 1 -0.4516 -1.6611 -1.2304 24 1 -1.1508 -4.1680 -1.3452 25 1 0.2655 -6.6383 -0.3395 26 1 3.9994 -5.7749 1.5318 27 1 3.6880 -3.3763 1.1154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020494316.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:11 Heat of formation + Delta-G solvation = -111.067510 kcal Electronic energy + Delta-G solvation = -18140.036204 eV Core-core repulsion = 14640.528406 eV Total energy + Delta-G solvation = -3499.507798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.03206 -48.54953 -48.49320 -41.93699 -38.16836 -35.14720 -32.93259 -31.42034 -29.82325 -27.32197 -25.86485 -23.47007 -22.19921 -21.78425 -19.70616 -19.36184 -19.10267 -18.73815 -17.58448 -16.73014 -16.28360 -15.49226 -15.46403 -15.30619 -15.00244 -14.93873 -14.86965 -14.67730 -14.67139 -14.39483 -13.90874 -13.57417 -13.29024 -13.00753 -12.82521 -12.40035 -12.36474 -12.15126 -11.72064 -11.11579 -10.51968 -9.18011 -8.81798 -8.50973 -6.32320 0.21610 0.58046 1.36541 1.40939 1.50519 1.82767 2.06155 2.16998 2.74549 2.84544 3.01444 3.05005 3.21629 3.62728 3.99395 4.15186 4.47089 4.53347 4.61786 4.91662 5.09585 5.15895 5.19892 5.23261 5.44769 5.57605 5.68452 6.04325 6.21968 6.49126 7.01501 7.42456 8.36735 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.005429 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.624921 B = 5156.601666 C = 5582.837853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.005 3.995 3 Si 1.012 2.988 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.303 5.303 10 C 0.055 3.945 11 C -0.261 4.261 12 C -0.150 4.150 13 C -0.018 4.018 14 C -0.241 4.241 15 C 0.526 3.474 16 F -0.183 7.183 17 F -0.180 7.180 18 F -0.182 7.182 19 C -0.085 4.085 20 C -0.120 4.120 21 C 0.040 3.960 22 H 0.287 0.713 23 H 0.165 0.835 24 H 0.156 0.844 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -7.042 0.542 7.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.201 4.201 3 Si 0.833 3.167 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.129 0.871 9 N 0.034 4.966 10 C -0.077 4.077 11 C -0.285 4.285 12 C -0.156 4.156 13 C -0.037 4.037 14 C -0.245 4.245 15 C 0.472 3.528 16 F -0.165 7.165 17 F -0.161 7.161 18 F -0.164 7.164 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.074 4.074 22 H 0.097 0.903 23 H 0.182 0.818 24 H 0.173 0.827 25 H 0.159 0.841 26 H 0.167 0.833 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.457 -6.568 0.592 7.446 hybrid contribution 0.036 0.682 0.059 0.686 sum 3.493 -5.885 0.652 6.875 Atomic orbital electron populations 1.69958 1.07708 1.30310 1.43087 1.26500 0.96532 1.03653 0.93437 0.84707 0.77764 0.74458 0.79817 1.18537 1.19553 1.18507 1.20227 0.94618 0.82870 1.52560 0.87101 1.40546 1.14868 1.04069 1.37102 1.22257 0.88783 0.97821 0.98886 1.21704 1.01644 0.91626 1.13487 1.19171 0.96809 0.92808 1.06835 1.20245 0.95407 0.93685 0.94316 1.19472 1.00722 0.90800 1.13461 1.18020 0.73402 0.87652 0.73731 1.93186 1.80759 1.86634 1.55889 1.93146 1.76611 1.96404 1.49949 1.93148 1.43061 1.84776 1.95373 1.20426 0.98858 0.90929 1.00329 1.20009 0.96196 0.95724 1.02093 1.19014 0.98463 0.85952 1.03965 0.90317 0.81798 0.82671 0.84134 0.83320 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.15 10.84 21.64 0.23 -43.91 15 2 C 0.00 0.22 5.35 84.90 0.45 0.68 15 3 Si 1.01 36.97 29.56 68.60 2.03 39.00 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 7 C -0.38 -19.10 9.93 84.00 0.83 -18.26 15 8 H 0.11 5.31 7.85 -2.91 -0.02 5.29 15 9 N -0.30 -15.60 2.92 -342.90 -1.00 -16.60 15 10 C 0.06 2.73 9.89 82.99 0.82 3.55 15 11 C -0.26 -11.58 11.09 23.57 0.26 -11.32 15 12 C -0.15 -6.67 6.37 -20.17 -0.13 -6.80 15 13 C -0.02 -0.68 9.44 22.47 0.21 -0.47 15 14 C -0.24 -8.44 5.45 -19.85 -0.11 -8.55 15 15 C 0.53 15.97 3.36 71.24 0.24 16.20 15 16 F -0.18 -5.49 17.30 44.97 0.78 -4.71 15 17 F -0.18 -5.22 16.44 44.97 0.74 -4.48 15 18 F -0.18 -5.43 16.45 44.97 0.74 -4.69 15 19 C -0.09 -2.99 9.37 22.31 0.21 -2.78 15 20 C -0.12 -4.89 9.95 22.36 0.22 -4.67 15 21 C 0.04 1.88 6.75 38.92 0.26 2.15 15 22 H 0.29 13.25 8.31 -92.71 -0.77 12.48 15 23 H 0.16 8.25 6.33 -2.91 -0.02 8.23 15 24 H 0.16 5.80 8.06 -2.91 -0.02 5.78 15 25 H 0.14 4.53 7.59 -2.91 -0.02 4.51 15 26 H 0.15 4.26 7.58 -2.91 -0.02 4.23 15 27 H 0.13 4.74 8.06 -2.91 -0.02 4.72 15 Total: -1.00 -54.31 255.56 8.02 -46.29 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.22 Total: 19.37 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.28 Total: -30.27 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.77 Total: -60.51 kcal Atomic # 9 Polarization: -16.14 SS G_CDS: 2.26 Total: -13.88 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -54.31 8.02 -46.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020494316.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.775 kcal (2) G-P(sol) polarization free energy of solvation -54.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds