Wall clock time and date at job start Mon Mar 30 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31061 * 1 3 3 Si 1.86799 * 119.99548 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99747 * 3 2 1 5 5 H 1.48499 * 109.47520 * 30.00031 * 3 2 1 6 6 H 1.48501 * 109.47024 * 150.00458 * 3 2 1 7 7 C 1.39736 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.40884 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.38890 * 126.93534 * 359.97438 * 9 7 2 11 11 N 1.35643 * 109.28861 * 180.02562 * 10 9 7 12 12 H 0.97000 * 124.69115 * 179.97438 * 11 10 9 13 13 C 1.38151 * 110.61479 * 359.97438 * 11 10 9 14 14 C 1.39123 * 132.80159 * 179.97438 * 13 11 10 15 15 C 1.37865 * 119.96883 * 179.73307 * 14 13 11 16 16 C 1.50697 * 119.68753 * 180.27845 * 15 14 13 17 17 F 1.39902 * 109.46843 * 180.27598 * 16 15 14 18 18 F 1.39907 * 109.46937 * 300.27456 * 16 15 14 19 19 F 1.39893 * 109.47480 * 60.27592 * 16 15 14 20 20 C 1.38672 * 120.62298 * 0.55562 * 15 14 13 21 21 C 1.37880 * 120.25049 * 359.46296 * 20 15 14 22 22 C 1.39191 * 119.69731 * 0.25589 * 21 20 15 23 23 H 0.96992 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.08002 * 125.36156 * 0.03149 * 10 9 7 25 25 H 1.08001 * 120.01448 * 0.05225 * 14 13 11 26 26 H 1.08002 * 119.87665 * 179.74603 * 20 15 14 27 27 H 1.08005 * 120.15156 * 180.23211 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2445 1.6178 0.0000 4 1 2.4920 2.0465 -1.4001 5 1 1.4419 2.6527 0.7000 6 1 3.5421 1.4403 0.6999 7 6 2.0093 -1.2101 -0.0005 8 1 3.0893 -1.2101 -0.0001 9 6 1.3049 -2.4302 -0.0005 10 6 -0.0739 -2.5979 0.0005 11 7 -0.3641 -3.9230 0.0007 12 1 -1.2613 -4.2916 0.0017 13 6 0.7950 -4.6747 -0.0008 14 6 1.0326 -6.0455 -0.0007 15 6 2.3270 -6.5201 -0.0080 16 6 2.5770 -8.0062 -0.0142 17 9 3.9551 -8.2471 -0.0147 18 9 2.0035 -8.5804 1.1254 19 9 2.0046 -8.5706 -1.1591 20 6 3.4010 -5.6429 -0.0038 21 6 3.1856 -4.2811 -0.0034 22 6 1.8836 -3.7889 -0.0019 23 1 -0.4850 0.8400 0.0004 24 1 -0.8007 -1.7991 0.0009 25 1 0.2034 -6.7375 -0.0002 26 1 4.4100 -6.0279 -0.0054 27 1 4.0232 -3.5993 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026894194.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:06 Heat of formation + Delta-G solvation = -122.080013 kcal Electronic energy + Delta-G solvation = -18038.739564 eV Core-core repulsion = 14538.754228 eV Total energy + Delta-G solvation = -3499.985335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.08451 -48.59459 -48.54799 -41.56720 -37.78800 -35.46988 -32.90317 -30.52260 -30.37734 -27.19392 -25.90961 -23.65467 -22.13748 -21.47966 -19.65888 -19.40992 -19.11209 -18.12583 -17.80901 -17.06719 -16.08428 -15.58669 -15.48837 -15.00433 -14.99971 -14.96088 -14.82628 -14.71845 -14.63620 -14.50072 -14.31123 -13.08424 -12.95630 -12.93441 -12.64585 -12.46230 -12.08382 -11.73352 -11.52001 -11.32906 -10.34850 -8.97515 -8.64943 -8.43235 -6.02284 0.13386 0.68055 1.41311 1.45059 1.56916 1.74034 2.22156 2.30299 2.62245 2.79134 2.97124 3.22811 3.50931 3.61367 3.98348 4.23314 4.49043 4.57782 4.76909 4.89468 5.21889 5.25005 5.34499 5.59685 5.76941 5.84864 6.08981 6.34333 6.68999 7.06941 7.14056 7.28754 8.55622 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.043837 B = 0.005271 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.583277 B = 5310.519554 C = 5774.601816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.014 3.986 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.452 4.452 8 H 0.070 0.930 9 C -0.026 4.026 10 C -0.087 4.087 11 N -0.578 5.578 12 H 0.415 0.585 13 C 0.069 3.931 14 C -0.088 4.088 15 C -0.182 4.182 16 C 0.524 3.476 17 F -0.176 7.176 18 F -0.181 7.181 19 F -0.181 7.181 20 C -0.140 4.140 21 C -0.069 4.069 22 C -0.140 4.140 23 H 0.281 0.719 24 H 0.186 0.814 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -9.421 -0.004 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.088 0.912 9 C -0.031 4.031 10 C -0.213 4.213 11 N -0.180 5.180 12 H 0.252 0.748 13 C -0.042 4.042 14 C -0.109 4.109 15 C -0.185 4.185 16 C 0.470 3.530 17 F -0.157 7.157 18 F -0.163 7.163 19 F -0.163 7.163 20 C -0.160 4.160 21 C -0.087 4.087 22 C -0.147 4.147 23 H 0.091 0.909 24 H 0.203 0.797 25 H 0.158 0.842 26 H 0.166 0.834 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.754 -9.232 0.000 9.397 hybrid contribution -0.250 0.485 -0.010 0.546 sum 1.504 -8.747 -0.010 8.875 Atomic orbital electron populations 1.69468 1.08266 1.29174 1.41844 1.26466 0.95736 1.03711 0.93421 0.85095 0.78650 0.76417 0.78888 1.19409 1.19748 1.18757 1.18992 0.94177 0.90209 1.45101 0.91212 1.18544 0.91768 0.90476 1.02338 1.23346 0.97831 0.83135 1.16984 1.41426 1.06186 1.05533 1.64880 0.74802 1.18218 0.87411 0.92153 1.06388 1.19659 0.96168 0.91739 1.03353 1.19408 0.95261 0.90490 1.13319 1.18032 0.73693 0.87927 0.73372 1.93136 1.31040 1.95330 1.96231 1.93188 1.84748 1.86769 1.51564 1.93185 1.84787 1.87123 1.51167 1.20587 0.98485 0.91893 1.05072 1.20505 0.95028 0.94882 0.98300 1.19910 0.93628 0.94371 1.06786 0.90854 0.79742 0.84167 0.83420 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.59 10.33 21.80 0.23 -43.36 15 2 C 0.01 0.72 5.49 85.17 0.47 1.18 15 3 Si 0.99 38.88 29.56 68.60 2.03 40.91 15 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.45 -24.18 9.42 23.28 0.22 -23.96 15 8 H 0.07 3.60 7.84 -2.91 -0.02 3.58 15 9 C -0.03 -1.38 6.10 -19.98 -0.12 -1.50 15 10 C -0.09 -4.31 10.88 84.26 0.92 -3.39 15 11 N -0.58 -23.70 5.99 -184.94 -1.11 -24.80 15 12 H 0.42 13.48 8.96 -92.71 -0.83 12.64 15 13 C 0.07 2.90 7.23 38.87 0.28 3.18 15 14 C -0.09 -3.08 9.59 22.39 0.21 -2.86 15 15 C -0.18 -6.09 5.38 -19.85 -0.11 -6.20 15 16 C 0.52 15.13 3.31 71.24 0.24 15.37 15 17 F -0.18 -4.85 15.94 44.97 0.72 -4.14 15 18 F -0.18 -5.16 17.23 44.97 0.77 -4.39 15 19 F -0.18 -5.17 17.23 44.97 0.77 -4.39 15 20 C -0.14 -4.80 9.41 22.29 0.21 -4.59 15 21 C -0.07 -2.77 10.09 22.41 0.23 -2.54 15 22 C -0.14 -6.55 6.33 -20.04 -0.13 -6.67 15 23 H 0.28 13.08 8.30 -92.71 -0.77 12.31 15 24 H 0.19 9.46 5.68 -2.91 -0.02 9.44 15 25 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 26 H 0.15 4.21 7.13 -2.91 -0.02 4.19 15 27 H 0.13 4.78 8.06 -2.91 -0.02 4.76 15 Total: -1.00 -56.12 254.86 6.24 -49.88 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.41 Total: 22.28 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.42 Total: -31.99 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.88 Total: -68.17 kcal Atomic # 9 Polarization: -15.19 SS G_CDS: 2.27 Total: -12.92 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -56.12 6.24 -49.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026894194.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.199 kcal (2) G-P(sol) polarization free energy of solvation -56.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds