Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48496 * 109.47192 * 269.99604 * 3 2 1 5 5 H 1.48501 * 109.47073 * 29.99621 * 3 2 1 6 6 H 1.48503 * 109.47008 * 149.99598 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.35925 * 116.99615 * 180.02562 * 11 10 9 13 13 C 1.38740 * 120.04546 * 359.72204 * 12 11 10 14 14 C 1.38126 * 119.95501 * 179.74679 * 13 12 11 15 15 C 1.38384 * 120.04469 * 0.53338 * 14 13 12 16 16 Cl 1.73599 * 119.95984 * 179.76596 * 15 14 13 17 17 C 1.38346 * 120.08151 * 359.74025 * 15 14 13 18 18 C 1.38157 * 120.04531 * 359.97438 * 17 15 14 19 19 C 1.50704 * 120.02126 * 180.02562 * 18 17 15 20 20 N 1.46907 * 109.46718 * 260.01682 * 19 18 17 21 21 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46845 * 59.99984 * 9 7 2 23 23 H 1.08996 * 109.47472 * 300.00070 * 9 7 2 24 24 H 1.08999 * 109.47084 * 60.00299 * 10 9 7 25 25 H 1.08998 * 109.47592 * 300.00401 * 10 9 7 26 26 H 1.07999 * 120.02185 * 0.02562 * 13 12 11 27 27 H 1.07996 * 119.97486 * 180.27442 * 14 13 12 28 28 H 1.08010 * 119.97376 * 180.02562 * 17 15 14 29 29 H 1.08997 * 109.47290 * 20.01596 * 19 18 17 30 30 H 1.08996 * 109.47195 * 140.01900 * 19 18 17 31 31 H 1.00894 * 110.99690 * 179.97438 * 20 19 18 32 32 H 1.00893 * 110.99890 * 303.95330 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 -0.0001 12 6 2.2710 -6.0396 0.0004 13 6 3.6565 -5.9680 -0.0044 14 6 4.4071 -7.1276 0.0013 15 6 3.7779 -8.3601 0.0008 16 17 4.7233 -9.8161 0.0019 17 6 2.3964 -8.4335 -0.0002 18 6 1.6422 -7.2759 0.0000 19 6 0.1373 -7.3564 -0.0004 20 7 -0.3640 -7.1424 -1.3646 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8720 -3.6044 -0.8894 26 1 4.1479 -5.0063 -0.0081 27 1 5.4856 -7.0723 0.0021 28 1 1.9071 -9.3964 -0.0002 29 1 -0.1740 -8.3401 0.3509 30 1 -0.2677 -6.5898 0.6600 31 1 -1.3714 -7.1920 -1.3915 32 1 -0.0349 -6.2644 -1.7371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037701023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -39.256444 kcal Electronic energy + Delta-G solvation = -16098.650422 eV Core-core repulsion = 13277.513572 eV Total energy + Delta-G solvation = -2821.136851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12838 -37.55129 -36.26703 -34.63712 -33.43822 -30.77896 -30.56203 -29.04966 -25.23619 -24.93299 -22.64099 -21.32659 -20.59282 -17.93868 -16.55459 -16.26038 -15.96228 -15.62679 -15.17000 -14.61701 -14.40748 -14.33628 -13.43355 -13.22619 -13.03155 -12.41519 -12.29390 -12.21160 -11.94073 -11.45083 -11.12946 -11.05012 -10.78958 -10.75482 -10.52972 -9.92044 -9.75984 -9.39160 -9.03052 -8.58307 -8.52196 -7.90041 -6.17806 -4.22871 1.24156 1.32946 2.19182 3.22873 3.29134 3.31485 3.62109 3.66137 4.34663 4.66377 4.81461 4.94686 5.14456 5.19076 5.19562 5.50590 5.50833 5.74367 5.89011 5.90543 5.94412 6.17985 6.23785 6.36548 6.53901 6.68724 7.17757 7.37180 7.52511 7.53202 7.68953 7.89544 8.14588 8.82458 9.42199 10.93676 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.004305 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.170289 B = 6502.329987 C = 7315.189362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.063 3.937 11 O -0.312 6.312 12 C 0.156 3.844 13 C -0.201 4.201 14 C -0.069 4.069 15 C -0.084 4.084 16 Cl -0.084 7.084 17 C -0.056 4.056 18 C -0.114 4.114 19 C 0.112 3.888 20 N -0.846 5.846 21 H 0.264 0.736 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.341 0.659 32 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -15.653 0.225 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.011 4.011 11 O -0.224 6.224 12 C 0.108 3.892 13 C -0.220 4.220 14 C -0.088 4.088 15 C -0.110 4.110 16 Cl -0.055 7.055 17 C -0.075 4.075 18 C -0.116 4.116 19 C -0.018 4.018 20 N -0.376 5.376 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.801 -16.267 0.053 16.961 hybrid contribution 0.390 1.762 0.403 1.850 sum 5.191 -14.505 0.457 15.412 Atomic orbital electron populations 1.69967 1.06122 1.27078 1.49549 1.24981 0.94906 0.99421 0.94774 0.86479 0.79748 0.82852 0.78282 1.20439 1.21012 1.19732 1.20953 0.93069 0.90150 1.52493 0.92332 1.19113 0.94104 0.88974 0.98803 1.23412 0.97229 0.80547 0.99905 1.86160 1.36530 1.13170 1.86573 1.19112 0.90046 0.87340 0.92749 1.21308 0.92941 0.99503 1.08243 1.20797 1.00180 0.90105 0.97671 1.20627 0.91708 0.87187 1.11513 1.98335 1.72790 1.36984 1.97402 1.20649 0.91132 0.98167 0.97563 1.19053 0.96001 0.89772 1.06758 1.20450 0.89653 1.01102 0.90595 1.58841 1.15094 1.42463 1.21225 0.92646 0.95428 0.95460 0.92927 0.92854 0.84216 0.85063 0.84722 0.90592 0.93640 0.84723 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.06 1.26 4.68 37.16 0.17 1.43 16 11 O -0.31 -5.78 9.32 -19.50 -0.18 -5.97 16 12 C 0.16 2.51 6.66 -39.22 -0.26 2.25 16 13 C -0.20 -2.95 9.04 -39.44 -0.36 -3.31 16 14 C -0.07 -0.89 9.82 -39.57 -0.39 -1.28 16 15 C -0.08 -1.08 6.32 -39.49 -0.25 -1.33 16 16 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.46 16 17 C -0.06 -0.72 9.45 -39.57 -0.37 -1.10 16 18 C -0.11 -1.65 5.41 -104.48 -0.56 -2.21 16 19 C 0.11 1.47 6.58 -4.97 -0.03 1.44 16 20 N -0.85 -10.95 9.61 -11.40 -0.11 -11.06 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16 25 H 0.05 1.01 7.65 -51.93 -0.40 0.62 16 26 H 0.14 1.97 6.30 -52.49 -0.33 1.64 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.13 1.49 8.04 -52.48 -0.42 1.07 16 29 H 0.08 0.84 8.00 -51.93 -0.42 0.43 16 30 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 31 H 0.34 3.67 9.08 -39.29 -0.36 3.31 16 32 H 0.35 5.00 8.93 -39.30 -0.35 4.65 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -28.40 293.80 -8.15 -36.55 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.89 Total: 4.31 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.61 Total: -16.53 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.63 Total: -36.09 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.18 Total: -5.97 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.40 -8.15 -36.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037701023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.702 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds