Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48496 * 109.47192 * 269.99604 * 3 2 1 5 5 H 1.48501 * 109.47073 * 29.99621 * 3 2 1 6 6 H 1.48503 * 109.47008 * 149.99598 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.35925 * 116.99615 * 180.02562 * 11 10 9 13 13 C 1.38740 * 120.04546 * 359.72204 * 12 11 10 14 14 C 1.38126 * 119.95501 * 179.74679 * 13 12 11 15 15 C 1.38384 * 120.04469 * 0.53338 * 14 13 12 16 16 Cl 1.73599 * 119.95984 * 179.76596 * 15 14 13 17 17 C 1.38346 * 120.08151 * 359.74025 * 15 14 13 18 18 C 1.38157 * 120.04531 * 359.97438 * 17 15 14 19 19 C 1.50704 * 120.02126 * 180.02562 * 18 17 15 20 20 N 1.46907 * 109.46718 * 260.01682 * 19 18 17 21 21 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46845 * 59.99984 * 9 7 2 23 23 H 1.08996 * 109.47472 * 300.00070 * 9 7 2 24 24 H 1.08999 * 109.47084 * 60.00299 * 10 9 7 25 25 H 1.08998 * 109.47592 * 300.00401 * 10 9 7 26 26 H 1.07999 * 120.02185 * 0.02562 * 13 12 11 27 27 H 1.07996 * 119.97486 * 180.27442 * 14 13 12 28 28 H 1.08010 * 119.97376 * 180.02562 * 17 15 14 29 29 H 1.08997 * 109.47290 * 20.01596 * 19 18 17 30 30 H 1.08996 * 109.47195 * 140.01900 * 19 18 17 31 31 H 1.00894 * 110.99690 * 179.97438 * 20 19 18 32 32 H 1.00893 * 110.99890 * 303.95330 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 -0.0001 12 6 2.2710 -6.0396 0.0004 13 6 3.6565 -5.9680 -0.0044 14 6 4.4071 -7.1276 0.0013 15 6 3.7779 -8.3601 0.0008 16 17 4.7233 -9.8161 0.0019 17 6 2.3964 -8.4335 -0.0002 18 6 1.6422 -7.2759 0.0000 19 6 0.1373 -7.3564 -0.0004 20 7 -0.3640 -7.1424 -1.3646 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8720 -3.6044 -0.8894 26 1 4.1479 -5.0063 -0.0081 27 1 5.4856 -7.0723 0.0021 28 1 1.9071 -9.3964 -0.0002 29 1 -0.1740 -8.3401 0.3509 30 1 -0.2677 -6.5898 0.6600 31 1 -1.3714 -7.1920 -1.3915 32 1 -0.0349 -6.2644 -1.7371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037701023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -56.917073 kcal Electronic energy + Delta-G solvation = -16099.416245 eV Core-core repulsion = 13277.513572 eV Total energy + Delta-G solvation = -2821.902673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33132 -38.79508 -37.30510 -35.69098 -35.43240 -32.43456 -31.75933 -30.32883 -27.07392 -25.99024 -24.14381 -22.55452 -22.04505 -19.32699 -18.23756 -17.50787 -17.28019 -17.01062 -16.53567 -16.27089 -15.52688 -15.46274 -14.72115 -14.41699 -14.33812 -14.19643 -13.74363 -13.35986 -13.09473 -13.02494 -12.81833 -12.50645 -12.20407 -12.17525 -11.77826 -11.57753 -11.44532 -11.38103 -10.61924 -10.09046 -9.64326 -9.06825 -8.27299 -6.40351 0.17374 0.21669 1.18096 1.41602 1.42820 1.53851 2.21304 2.46967 2.54563 3.07930 3.62136 3.74969 3.90949 4.04391 4.15239 4.26790 4.30288 4.42196 4.49331 4.71620 4.72339 4.89399 5.09930 5.18100 5.26439 5.34925 5.47272 5.57615 5.71933 6.06306 6.11551 6.40339 6.54753 6.74554 7.30072 8.85496 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.004305 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.170289 B = 6502.329987 C = 7315.189362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.082 3.918 11 O -0.327 6.327 12 C 0.126 3.874 13 C -0.206 4.206 14 C -0.067 4.067 15 C -0.082 4.082 16 Cl -0.066 7.066 17 C -0.054 4.054 18 C -0.119 4.119 19 C 0.112 3.888 20 N -0.846 5.846 21 H 0.266 0.734 22 H 0.000 1.000 23 H -0.002 1.002 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.100 0.900 30 H 0.028 0.972 31 H 0.351 0.649 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -16.620 0.206 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.006 4.006 10 C 0.008 3.992 11 O -0.241 6.241 12 C 0.079 3.921 13 C -0.225 4.225 14 C -0.086 4.086 15 C -0.109 4.109 16 Cl -0.038 7.038 17 C -0.073 4.073 18 C -0.121 4.121 19 C -0.018 4.018 20 N -0.376 5.376 21 H 0.075 0.925 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.119 0.881 30 H 0.046 0.954 31 H 0.165 0.835 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.547 -17.269 0.035 18.469 hybrid contribution -0.143 1.890 0.408 1.939 sum 6.404 -15.380 0.443 16.666 Atomic orbital electron populations 1.70105 1.07962 1.28171 1.50670 1.25975 0.95759 1.03503 0.94196 0.85341 0.78633 0.77833 0.78622 1.19625 1.20810 1.18376 1.21404 0.93845 0.91094 1.52048 0.91162 1.18925 0.94462 0.91157 0.96049 1.22928 0.95516 0.80048 1.00750 1.86088 1.36968 1.13390 1.87673 1.19381 0.90823 0.86836 0.95066 1.21413 0.92432 1.00410 1.08273 1.21035 1.01292 0.89536 0.96750 1.20790 0.91991 0.87895 1.10205 1.98347 1.72306 1.35865 1.97253 1.20883 0.91295 0.98476 0.96695 1.19254 0.96722 0.89605 1.06482 1.20501 0.89135 1.01832 0.90329 1.58874 1.16049 1.41669 1.21030 0.92493 0.98115 0.98371 0.92054 0.91875 0.83966 0.82769 0.82574 0.88149 0.95386 0.83493 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -29.75 9.11 25.60 0.23 -29.51 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.62 5.34 29.85 0.16 1.78 16 10 C 0.08 3.31 4.68 71.98 0.34 3.65 16 11 O -0.33 -12.45 9.32 -92.70 -0.86 -13.31 16 12 C 0.13 4.02 6.66 22.50 0.15 4.17 16 13 C -0.21 -5.82 9.04 22.36 0.20 -5.62 16 14 C -0.07 -1.60 9.82 22.28 0.22 -1.38 16 15 C -0.08 -1.91 6.32 22.33 0.14 -1.77 16 16 Cl -0.07 -1.34 28.95 -2.72 -0.08 -1.42 16 17 C -0.05 -1.29 9.45 22.28 0.21 -1.08 16 18 C -0.12 -3.32 5.41 -19.77 -0.11 -3.43 16 19 C 0.11 2.88 6.58 85.56 0.56 3.44 16 20 N -0.85 -21.57 9.61 -189.99 -1.83 -23.40 16 21 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.06 2.34 7.67 -2.39 -0.02 2.33 16 25 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 26 H 0.14 3.86 6.30 -2.91 -0.02 3.84 16 27 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.16 2.98 8.04 -2.91 -0.02 2.96 16 29 H 0.10 2.04 8.00 -2.39 -0.02 2.02 16 30 H 0.03 0.81 7.85 -2.39 -0.02 0.79 16 31 H 0.35 7.43 9.08 -89.70 -0.81 6.61 16 32 H 0.34 9.89 8.93 -89.70 -0.80 9.09 16 Total: -1.00 -61.08 293.80 1.65 -59.43 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.47 Total: 18.12 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 2.57 Total: -29.05 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.54 Total: -78.27 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.86 Total: -13.31 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -61.08 1.65 -59.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037701023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.515 kcal (2) G-P(sol) polarization free energy of solvation -61.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds