Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47036 * 180.02562 * 10 9 7 12 12 C 1.35931 * 117.00041 * 179.97438 * 11 10 9 13 13 C 1.38708 * 120.05529 * 359.73325 * 12 11 10 14 14 C 1.38154 * 119.95447 * 179.72047 * 13 12 11 15 15 C 1.38276 * 120.07311 * 0.54825 * 14 13 12 16 16 C 1.50708 * 119.93786 * 179.74230 * 15 14 13 17 17 N 1.46890 * 109.47331 * 269.97968 * 16 15 14 18 18 C 1.38248 * 120.12383 * 359.72568 * 15 14 13 19 19 C 1.38258 * 120.03882 * 0.02562 * 18 15 14 20 20 Cl 1.73598 * 120.03615 * 179.97438 * 19 18 15 21 21 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.07996 * 120.02012 * 359.96626 * 13 12 11 27 27 H 1.07997 * 119.96524 * 180.25116 * 14 13 12 28 28 H 1.08997 * 109.46881 * 29.98378 * 16 15 14 29 29 H 1.09005 * 109.46455 * 149.97712 * 16 15 14 30 30 H 1.00900 * 111.00177 * 56.04906 * 17 16 15 31 31 H 1.00903 * 111.00061 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.98290 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 8 5.4504 -2.6367 0.0001 12 6 6.0676 -3.8479 0.0008 13 6 5.3132 -5.0119 0.0069 14 6 5.9425 -6.2418 0.0018 15 6 7.3234 -6.3135 0.0019 16 6 8.0068 -7.6568 0.0021 17 7 8.2291 -8.0928 1.3870 18 6 8.0784 -5.1554 0.0015 19 6 7.4536 -3.9220 0.0015 20 17 8.4017 -2.4677 0.0016 21 1 -0.4849 0.8402 0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8904 24 1 3.6584 -3.1503 0.8903 25 1 3.6578 -3.1507 -0.8897 26 1 4.2347 -4.9568 0.0118 27 1 5.3554 -7.1482 0.0025 28 1 7.3782 -8.3842 -0.5115 29 1 8.9646 -7.5771 -0.5121 30 1 7.3626 -8.1124 1.9036 31 1 8.6869 -8.9917 1.4141 32 1 9.1568 -5.2141 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043477490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -32.319500 kcal Electronic energy + Delta-G solvation = -15934.092559 eV Core-core repulsion = 13113.256517 eV Total energy + Delta-G solvation = -2820.836042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07260 -37.80582 -36.32727 -34.53224 -33.31826 -31.06712 -30.74560 -29.47114 -25.64254 -24.47877 -22.88455 -21.25359 -20.45360 -18.18415 -16.84038 -16.38226 -16.09643 -15.62111 -15.24537 -14.79642 -14.46524 -14.15942 -13.74170 -13.32185 -13.20051 -12.87012 -12.52710 -11.98076 -11.67428 -11.54937 -11.26319 -11.00219 -10.84758 -10.64364 -10.24481 -10.03834 -9.84531 -9.37626 -9.01628 -8.85839 -8.64282 -7.96810 -6.15807 -4.17031 1.16488 1.32363 2.32594 3.28091 3.35402 3.41577 3.55746 3.57843 4.37822 4.45722 4.63117 4.78706 4.98319 5.03192 5.18608 5.22849 5.38849 5.58205 5.75801 5.84393 5.84670 6.04821 6.20662 6.37275 6.44128 6.63151 6.80463 7.02098 7.13096 7.20142 7.57615 7.74243 8.35648 8.84254 9.44554 10.96603 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.004664 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.789036 B = 6002.587849 C = 6802.918730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.070 3.930 11 O -0.306 6.306 12 C 0.157 3.843 13 C -0.201 4.201 14 C -0.068 4.068 15 C -0.130 4.130 16 C 0.110 3.890 17 N -0.847 5.847 18 C -0.052 4.052 19 C -0.079 4.079 20 Cl -0.062 7.062 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.141 0.859 27 H 0.124 0.876 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.343 0.657 31 H 0.341 0.659 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 -14.473 -0.034 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.003 4.003 11 O -0.218 6.218 12 C 0.108 3.892 13 C -0.220 4.220 14 C -0.087 4.087 15 C -0.131 4.131 16 C -0.020 4.020 17 N -0.378 5.378 18 C -0.071 4.071 19 C -0.106 4.106 20 Cl -0.033 7.033 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.142 0.858 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.420 -13.365 0.023 21.171 hybrid contribution -0.508 0.081 -0.264 0.578 sum 15.912 -13.284 -0.241 20.729 Atomic orbital electron populations 1.69897 1.06280 1.27252 1.50115 1.24922 0.94756 0.99213 0.94033 0.86768 0.80509 0.83261 0.78826 1.20025 1.21146 1.18672 1.20822 0.88262 0.94940 1.52523 0.90751 1.19581 0.96885 0.90030 0.98061 1.23168 0.74243 1.02317 1.00621 1.86230 1.24239 1.24869 1.86481 1.18875 0.90533 0.86226 0.93563 1.21324 1.00949 0.91509 1.08188 1.20875 0.93721 0.97221 0.96888 1.19470 0.93127 0.94451 1.06022 1.20566 0.99415 0.92110 0.89873 1.58711 1.30434 1.35191 1.13432 1.20655 1.00081 0.89178 0.97204 1.20189 0.88983 0.88659 1.12751 1.98355 1.71426 1.36352 1.97159 0.92420 0.95287 0.95743 0.92286 0.92314 0.84129 0.85761 0.94639 0.90275 0.84430 0.84630 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.53 -14.72 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 10 C 0.07 1.42 4.68 37.16 0.17 1.59 16 11 O -0.31 -5.93 9.60 -19.52 -0.19 -6.12 16 12 C 0.16 2.60 6.68 -39.20 -0.26 2.34 16 13 C -0.20 -2.87 9.04 -39.44 -0.36 -3.22 16 14 C -0.07 -0.79 9.69 -39.60 -0.38 -1.18 16 15 C -0.13 -1.45 5.39 -104.60 -0.56 -2.01 16 16 C 0.11 0.92 6.91 -4.98 -0.03 0.89 16 17 N -0.85 -6.67 9.61 -11.41 -0.11 -6.78 16 18 C -0.05 -0.65 9.48 -39.57 -0.38 -1.03 16 19 C -0.08 -1.19 6.33 -39.36 -0.25 -1.44 16 20 Cl -0.06 -0.94 28.50 -51.86 -1.48 -2.42 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 23 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 24 H 0.06 1.13 7.65 -51.93 -0.40 0.74 16 25 H 0.06 1.12 7.68 -51.93 -0.40 0.73 16 26 H 0.14 1.95 6.30 -52.49 -0.33 1.62 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.34 2.57 8.99 -39.29 -0.35 2.21 16 31 H 0.34 1.92 9.08 -39.29 -0.36 1.56 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -30.60 290.68 -7.77 -38.37 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.87 Total: -0.58 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.60 Total: -17.44 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.66 Total: -33.13 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.19 Total: -6.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.60 -7.77 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043477490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.053 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds