Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47036 * 180.02562 * 10 9 7 12 12 C 1.35931 * 117.00041 * 179.97438 * 11 10 9 13 13 C 1.38708 * 120.05529 * 359.73325 * 12 11 10 14 14 C 1.38154 * 119.95447 * 179.72047 * 13 12 11 15 15 C 1.38276 * 120.07311 * 0.54825 * 14 13 12 16 16 C 1.50708 * 119.93786 * 179.74230 * 15 14 13 17 17 N 1.46890 * 109.47331 * 269.97968 * 16 15 14 18 18 C 1.38248 * 120.12383 * 359.72568 * 15 14 13 19 19 C 1.38258 * 120.03882 * 0.02562 * 18 15 14 20 20 Cl 1.73598 * 120.03615 * 179.97438 * 19 18 15 21 21 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.07996 * 120.02012 * 359.96626 * 13 12 11 27 27 H 1.07997 * 119.96524 * 180.25116 * 14 13 12 28 28 H 1.08997 * 109.46881 * 29.98378 * 16 15 14 29 29 H 1.09005 * 109.46455 * 149.97712 * 16 15 14 30 30 H 1.00900 * 111.00177 * 56.04906 * 17 16 15 31 31 H 1.00903 * 111.00061 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.98290 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 8 5.4504 -2.6367 0.0001 12 6 6.0676 -3.8479 0.0008 13 6 5.3132 -5.0119 0.0069 14 6 5.9425 -6.2418 0.0018 15 6 7.3234 -6.3135 0.0019 16 6 8.0068 -7.6568 0.0021 17 7 8.2291 -8.0928 1.3870 18 6 8.0784 -5.1554 0.0015 19 6 7.4536 -3.9220 0.0015 20 17 8.4017 -2.4677 0.0016 21 1 -0.4849 0.8402 0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6809 -0.8904 24 1 3.6584 -3.1503 0.8903 25 1 3.6578 -3.1507 -0.8897 26 1 4.2347 -4.9568 0.0118 27 1 5.3554 -7.1482 0.0025 28 1 7.3782 -8.3842 -0.5115 29 1 8.9646 -7.5771 -0.5121 30 1 7.3626 -8.1124 1.9036 31 1 8.6869 -8.9917 1.4141 32 1 9.1568 -5.2141 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043477490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -52.809629 kcal Electronic energy + Delta-G solvation = -15934.981078 eV Core-core repulsion = 13113.256517 eV Total energy + Delta-G solvation = -2821.724561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23875 -38.99889 -37.44989 -35.61543 -35.08615 -32.83934 -31.84734 -30.57595 -27.30785 -25.44777 -24.18962 -22.50785 -21.91477 -19.64636 -18.60844 -17.43811 -17.14554 -17.06834 -16.33722 -16.13884 -15.52402 -15.45485 -14.97763 -14.68929 -14.61216 -14.21315 -13.68330 -13.51021 -13.24785 -12.72843 -12.47215 -12.34357 -12.27511 -12.13104 -11.83358 -11.76262 -11.58520 -11.44550 -10.82576 -9.90152 -9.59985 -9.10600 -8.36230 -6.42508 0.13029 0.26624 1.19910 1.34686 1.36493 1.48975 2.21151 2.31915 2.55176 2.99152 3.71297 3.75931 3.92536 4.01578 4.18299 4.20583 4.27380 4.31040 4.56489 4.64405 4.76397 4.84158 5.03749 5.10482 5.20471 5.28600 5.45619 5.49937 5.69400 6.14582 6.24548 6.34581 6.63125 6.65060 7.22892 8.79328 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.004664 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.789036 B = 6002.587849 C = 6802.918730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.535 4.535 8 H 0.045 0.955 9 C -0.006 4.006 10 C 0.085 3.915 11 O -0.325 6.325 12 C 0.120 3.880 13 C -0.208 4.208 14 C -0.062 4.062 15 C -0.116 4.116 16 C 0.112 3.888 17 N -0.857 5.857 18 C -0.053 4.053 19 C -0.090 4.090 20 Cl -0.071 7.071 21 H 0.270 0.730 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.139 0.861 27 H 0.156 0.844 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.345 0.655 31 H 0.355 0.645 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.855 -15.831 -0.083 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.573 4.573 8 H 0.064 0.936 9 C -0.043 4.043 10 C 0.011 3.989 11 O -0.239 6.239 12 C 0.073 3.927 13 C -0.226 4.226 14 C -0.081 4.081 15 C -0.117 4.117 16 C -0.018 4.018 17 N -0.389 5.389 18 C -0.072 4.072 19 C -0.117 4.117 20 Cl -0.042 7.042 21 H 0.079 0.921 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.323 -14.756 -0.025 23.526 hybrid contribution -1.045 0.303 -0.242 1.115 sum 17.278 -14.453 -0.267 22.527 Atomic orbital electron populations 1.70020 1.07998 1.28467 1.51591 1.25817 0.95567 1.03103 0.93702 0.85741 0.79426 0.78674 0.79390 1.19007 1.20397 1.17686 1.21098 0.90380 0.93963 1.51842 0.93627 1.19430 0.94430 0.92770 0.97702 1.22751 0.75444 0.99671 1.01066 1.86131 1.23086 1.26871 1.87778 1.19157 0.91240 0.85854 0.96462 1.21451 1.00946 0.91932 1.08312 1.21222 0.94290 0.97257 0.95289 1.19884 0.93056 0.95504 1.03283 1.20603 1.00007 0.90627 0.90540 1.58671 1.30800 1.36396 1.13067 1.20947 1.01150 0.88584 0.96524 1.20419 0.88528 0.89285 1.13499 1.98344 1.71443 1.37150 1.97255 0.92087 0.95633 0.95706 0.91953 0.91871 0.84301 0.82641 0.92725 0.89323 0.84182 0.83033 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 7 C -0.53 -30.45 9.66 25.60 0.25 -30.20 16 8 H 0.05 2.78 7.99 -2.91 -0.02 2.75 16 9 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 10 C 0.08 3.45 4.68 71.98 0.34 3.79 16 11 O -0.32 -12.65 9.60 -92.77 -0.89 -13.54 16 12 C 0.12 3.93 6.68 22.52 0.15 4.08 16 13 C -0.21 -5.69 9.04 22.36 0.20 -5.49 16 14 C -0.06 -1.27 9.69 22.26 0.22 -1.06 16 15 C -0.12 -2.24 5.39 -19.85 -0.11 -2.35 16 16 C 0.11 1.43 6.91 85.56 0.59 2.03 16 17 N -0.86 -10.54 9.61 -190.01 -1.83 -12.37 16 18 C -0.05 -1.21 9.48 22.28 0.21 -1.00 16 19 C -0.09 -2.65 6.33 22.41 0.14 -2.51 16 20 Cl -0.07 -2.11 28.50 -2.72 -0.08 -2.19 16 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 22 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 23 H 0.02 1.18 7.57 -2.39 -0.02 1.17 16 24 H 0.06 2.43 7.65 -2.39 -0.02 2.41 16 25 H 0.06 2.45 7.68 -2.39 -0.02 2.43 16 26 H 0.14 3.77 6.30 -2.91 -0.02 3.76 16 27 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 29 H 0.09 1.01 8.08 -2.38 -0.02 0.99 16 30 H 0.35 4.05 8.99 -89.69 -0.81 3.24 16 31 H 0.36 2.78 9.08 -89.69 -0.81 1.97 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -66.19 290.68 1.45 -64.74 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -0.52 Total: 6.06 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 2.58 Total: -31.44 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.53 Total: -70.00 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.89 Total: -13.54 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.08 Total: -2.19 kcal Total: -66.19 1.45 -64.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043477490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.929 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds