Wall clock time and date at job start Mon Mar 30 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50705 * 109.47055 * 72.57034 * 3 2 1 5 5 C 1.38661 * 119.74637 * 270.29105 * 4 3 2 6 6 C 1.37592 * 120.24368 * 180.26097 * 5 4 3 7 7 C 1.40732 * 119.74818 * 359.44835 * 6 5 4 8 8 C 1.41396 * 120.24599 * 180.25942 * 7 6 5 9 9 H 1.07996 * 120.00022 * 205.22677 * 8 7 6 10 10 C 1.39944 * 119.99879 * 25.21846 * 8 7 6 11 11 N 1.30827 * 120.00483 * 15.40952 * 10 8 7 12 12 Si 1.86802 * 119.99901 * 195.40501 * 10 8 7 13 13 H 1.48506 * 109.47227 * 60.00405 * 12 10 8 14 14 H 1.48497 * 109.47338 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47339 * 300.00307 * 12 10 8 16 16 C 1.40699 * 119.51256 * 0.27507 * 7 6 5 17 17 C 1.50697 * 120.12970 * 180.02562 * 16 7 6 18 18 F 1.39894 * 109.47202 * 180.02562 * 17 16 7 19 19 F 1.39904 * 109.47127 * 300.00728 * 17 16 7 20 20 F 1.39900 * 109.46712 * 60.00290 * 17 16 7 21 21 C 1.37637 * 119.74234 * 0.02562 * 16 7 6 22 22 H 1.08998 * 109.47381 * 312.56982 * 3 2 1 23 23 H 1.09000 * 109.47081 * 192.56479 * 3 2 1 24 24 H 1.08001 * 119.87830 * 0.02562 * 5 4 3 25 25 H 1.08004 * 120.12686 * 179.72768 * 6 5 4 26 26 H 0.96995 * 120.00330 * 179.97438 * 11 10 8 27 27 H 1.07995 * 119.87634 * 179.97438 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1106 -0.4247 -1.3556 5 6 3.3347 -1.7681 -1.6158 6 6 3.7986 -2.1674 -2.8482 7 6 4.0344 -1.2075 -3.8500 8 6 4.5058 -1.6067 -5.1219 9 1 5.0613 -0.9119 -5.7343 10 6 4.2527 -2.9021 -5.5871 11 7 3.3431 -3.6402 -5.0047 12 14 5.2137 -3.5772 -7.0397 13 1 6.6621 -3.5903 -6.7120 14 1 4.7598 -4.9602 -7.3338 15 1 4.9830 -2.7177 -8.2284 16 6 3.7979 0.1522 -3.5766 17 6 4.0452 1.1916 -4.6393 18 9 3.7404 2.4591 -4.1318 19 9 5.3899 1.1547 -5.0239 20 9 3.2355 0.9259 -5.7488 21 6 3.3399 0.5294 -2.3347 22 1 2.9717 -0.6944 0.7568 23 1 2.9709 1.0039 0.2236 24 1 3.1482 -2.5035 -0.8471 25 1 3.9767 -3.2138 -3.0473 26 1 3.1674 -4.5379 -5.3273 27 1 3.1580 1.5725 -2.1223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368226.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:36 Heat of formation + Delta-G solvation = -135.376189 kcal Electronic energy + Delta-G solvation = -18414.784732 eV Core-core repulsion = 14914.222831 eV Total energy + Delta-G solvation = -3500.561901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.83701 -48.38977 -48.25523 -39.81550 -37.52994 -35.85821 -33.49149 -31.88851 -29.80088 -27.11300 -25.72773 -22.87969 -22.09770 -19.55303 -19.15208 -19.10713 -18.67636 -17.74830 -17.12884 -15.97125 -15.89646 -15.40528 -15.23112 -15.14028 -14.80029 -14.66039 -14.57070 -14.50580 -14.29859 -14.05989 -13.62734 -13.38872 -13.15882 -12.89880 -12.74886 -12.56348 -12.20624 -12.07656 -11.58066 -11.38157 -11.10982 -9.61405 -9.37533 -8.77227 -6.52323 0.68638 0.91298 1.37518 1.46542 1.49774 1.96329 1.96809 2.12083 2.16652 2.58722 3.29384 3.36635 3.53177 3.57982 3.96414 4.32303 4.43281 4.62210 4.74987 4.96274 5.05028 5.20653 5.31245 5.52271 5.72848 5.92714 6.04662 6.18542 6.52652 6.74725 6.75695 6.83922 8.17386 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.008779 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.892374 B = 3188.804143 C = 4204.109450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.240 3.760 3 C 0.044 3.956 4 C -0.212 4.212 5 C -0.067 4.067 6 C -0.184 4.184 7 C 0.122 3.878 8 C -0.481 4.481 9 H 0.078 0.922 10 C 0.043 3.957 11 N -0.804 5.804 12 Si 0.975 3.025 13 H -0.255 1.255 14 H -0.262 1.262 15 H -0.265 1.265 16 C -0.327 4.327 17 C 0.522 3.478 18 F -0.188 7.188 19 F -0.192 7.192 20 F -0.195 7.195 21 C -0.032 4.032 22 H 0.145 0.855 23 H 0.142 0.858 24 H 0.130 0.870 25 H 0.114 0.886 26 H 0.294 0.706 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.401 2.870 4.607 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.076 4.076 3 C 0.005 3.995 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.203 4.203 7 C 0.119 3.881 8 C -0.508 4.508 9 H 0.096 0.904 10 C -0.175 4.175 11 N -0.429 5.429 12 Si 0.796 3.204 13 H -0.179 1.179 14 H -0.186 1.186 15 H -0.190 1.190 16 C -0.330 4.330 17 C 0.468 3.532 18 F -0.170 7.170 19 F -0.174 7.174 20 F -0.176 7.176 21 C -0.051 4.051 22 H 0.163 0.837 23 H 0.160 0.840 24 H 0.148 0.852 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.567 2.667 4.574 5.884 hybrid contribution 0.613 -0.238 -1.296 1.454 sum 3.180 2.429 3.277 5.172 Atomic orbital electron populations 1.81157 1.15239 1.11686 1.11376 1.30154 0.96029 0.90781 0.90588 1.18239 0.78455 1.07232 0.95617 1.18992 1.13534 0.92725 0.96167 1.21087 0.95818 0.95448 0.96145 1.21366 1.06639 0.99431 0.92848 1.17555 0.87052 0.90051 0.93463 1.20026 1.30812 0.98490 1.01500 0.90352 1.26699 0.93946 0.96106 1.00788 1.69807 1.23900 1.10395 1.38755 0.85329 0.79608 0.78002 0.77468 1.17893 1.18601 1.18987 1.19842 1.23432 0.93438 0.96296 1.18290 0.73246 0.80138 0.81515 1.93050 1.93108 1.43681 1.87131 1.93094 1.35463 1.96463 1.92336 1.93119 1.73775 1.93966 1.56771 1.20582 0.94060 0.99485 0.90931 0.83734 0.84032 0.85230 0.86811 0.89446 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -18.58 18.54 20.01 0.37 -18.21 15 2 C 0.24 7.03 15.42 89.44 1.38 8.41 15 3 C 0.04 0.94 5.82 28.05 0.16 1.10 15 4 C -0.21 -6.95 5.11 -19.67 -0.10 -7.05 15 5 C -0.07 -2.46 9.67 22.22 0.21 -2.25 15 6 C -0.18 -8.41 8.69 22.73 0.20 -8.21 15 7 C 0.12 6.00 5.56 -21.29 -0.12 5.88 15 8 C -0.48 -24.30 7.84 23.46 0.18 -24.12 15 9 H 0.08 3.98 6.03 -2.91 -0.02 3.96 15 10 C 0.04 2.02 5.19 85.26 0.44 2.46 15 11 N -0.80 -38.84 10.86 21.83 0.24 -38.60 15 12 Si 0.98 36.34 29.59 68.60 2.03 38.37 15 13 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 14 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 16 C -0.33 -14.67 5.42 -19.41 -0.11 -14.77 15 17 C 0.52 22.61 2.82 71.24 0.20 22.81 15 18 F -0.19 -7.21 15.97 44.97 0.72 -6.49 15 19 F -0.19 -8.34 15.68 44.97 0.71 -7.63 15 20 F -0.19 -9.05 16.49 44.97 0.74 -8.30 15 21 C -0.03 -1.21 9.06 22.22 0.20 -1.01 15 22 H 0.15 2.09 8.08 -2.39 -0.02 2.07 15 23 H 0.14 2.10 8.08 -2.39 -0.02 2.08 15 24 H 0.13 3.93 8.06 -2.91 -0.02 3.91 15 25 H 0.11 5.47 6.12 -2.91 -0.02 5.46 15 26 H 0.29 12.82 8.30 -92.71 -0.77 12.05 15 27 H 0.13 4.15 7.15 -2.91 -0.02 4.13 15 Total: -1.00 -58.80 260.87 8.69 -50.10 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.23 Total: 7.51 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 2.66 Total: -16.74 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.61 Total: -56.81 kcal Atomic # 9 Polarization: -24.59 SS G_CDS: 2.17 Total: -22.43 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -58.80 8.69 -50.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368226.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.271 kcal (2) G-P(sol) polarization free energy of solvation -58.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds