Wall clock time and date at job start Mon Mar 30 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47292 * 88.90198 * 3 2 1 5 5 C 1.37641 * 120.12634 * 265.25487 * 4 3 2 6 6 C 1.38608 * 120.24162 * 180.25858 * 5 4 3 7 7 C 1.38650 * 120.50801 * 359.73874 * 6 5 4 8 8 C 1.50702 * 119.88042 * 180.02562 * 7 6 5 9 9 F 1.39894 * 109.47091 * 269.97782 * 8 7 6 10 10 F 1.39902 * 109.46774 * 29.97826 * 8 7 6 11 11 F 1.39900 * 109.47302 * 149.97835 * 8 7 6 12 12 C 1.37604 * 120.24662 * 359.97438 * 7 6 5 13 13 C 1.40695 * 120.12523 * 84.99690 * 4 3 2 14 14 C 1.41392 * 120.24547 * 0.02710 * 13 4 3 15 15 H 1.07996 * 119.99909 * 333.49292 * 14 13 4 16 16 C 1.39945 * 120.00278 * 153.77520 * 14 13 4 17 17 N 1.30833 * 119.99683 * 343.65279 * 16 14 13 18 18 Si 1.86797 * 120.00372 * 163.65665 * 16 14 13 19 19 H 1.48494 * 109.47300 * 89.99721 * 18 16 14 20 20 H 1.48499 * 109.47114 * 210.00060 * 18 16 14 21 21 H 1.48500 * 109.47173 * 329.99775 * 18 16 14 22 22 H 1.09002 * 109.47096 * 328.89660 * 3 2 1 23 23 H 1.08999 * 109.47082 * 208.90532 * 3 2 1 24 24 H 1.07999 * 119.87584 * 359.97438 * 5 4 3 25 25 H 1.08003 * 119.74342 * 179.72155 * 6 5 4 26 26 H 1.07995 * 120.12768 * 180.02562 * 12 7 6 27 27 H 0.96997 * 119.99759 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1104 -0.0263 -1.4206 5 6 3.4341 -1.2242 -2.0162 6 6 3.9015 -1.2514 -3.3208 7 6 4.0433 -0.0759 -4.0423 8 6 4.5522 -0.1219 -5.4600 9 9 5.9471 -0.0148 -5.4585 10 9 4.1782 -1.3337 -6.0506 11 9 4.0038 0.9401 -6.1871 12 6 3.7202 1.1326 -3.4689 13 6 3.2452 1.1723 -2.1448 14 6 2.9111 2.4083 -1.5449 15 1 2.1833 2.4424 -0.7477 16 6 3.5192 3.5883 -1.9880 17 7 4.6065 3.5313 -2.7134 18 14 2.7785 5.2446 -1.5438 19 1 3.3603 5.7195 -0.2627 20 1 3.0792 6.2253 -2.6176 21 1 1.3072 5.1059 -1.3980 22 1 2.9718 -0.8791 0.5309 23 1 2.9709 0.9005 0.4967 24 1 3.3279 -2.1459 -1.4634 25 1 4.1573 -2.1954 -3.7788 26 1 3.8311 2.0469 -4.0327 27 1 5.0282 4.3492 -3.0202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368666.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:41 Heat of formation + Delta-G solvation = -133.989104 kcal Electronic energy + Delta-G solvation = -18288.712652 eV Core-core repulsion = 14788.210899 eV Total energy + Delta-G solvation = -3500.501752 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.04646 -48.56626 -48.51548 -39.92806 -37.39190 -35.68073 -34.00046 -31.55714 -29.68844 -27.37781 -25.68214 -23.16979 -21.89509 -19.75540 -19.38681 -19.21684 -18.29021 -18.12485 -16.81863 -16.29427 -16.01214 -15.42160 -15.33292 -15.10431 -14.99523 -14.75496 -14.71211 -14.54095 -14.26741 -14.19591 -13.77775 -13.36876 -13.07779 -12.81504 -12.74794 -12.56914 -12.39232 -12.12681 -11.49426 -11.39464 -11.09522 -9.56999 -9.41391 -8.70247 -6.40803 0.51417 0.96972 1.41151 1.47364 1.53601 1.86163 1.98644 2.00336 2.18321 2.59188 3.02526 3.26041 3.27764 3.54854 3.82722 4.35946 4.49330 4.59603 4.81139 4.97593 5.14293 5.17676 5.33344 5.45014 5.76076 5.87337 5.99885 6.20607 6.49802 6.77472 6.85254 6.89995 8.26378 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.009596 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.620493 B = 2917.165394 C = 4229.932180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.247 3.753 3 C 0.038 3.962 4 C -0.187 4.187 5 C -0.070 4.070 6 C -0.205 4.205 7 C -0.170 4.170 8 C 0.509 3.491 9 F -0.186 7.186 10 F -0.180 7.180 11 F -0.190 7.190 12 C -0.140 4.140 13 C 0.092 3.908 14 C -0.475 4.475 15 H 0.088 0.912 16 C 0.042 3.958 17 N -0.814 5.814 18 Si 0.967 3.033 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.267 1.267 22 H 0.148 0.852 23 H 0.123 0.877 24 H 0.148 0.852 25 H 0.125 0.875 26 H 0.108 0.892 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -3.948 1.264 4.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.069 4.069 3 C -0.001 4.001 4 C -0.190 4.190 5 C -0.088 4.088 6 C -0.224 4.224 7 C -0.171 4.171 8 C 0.455 3.545 9 F -0.167 7.167 10 F -0.162 7.162 11 F -0.172 7.172 12 C -0.159 4.159 13 C 0.089 3.911 14 C -0.503 4.503 15 H 0.106 0.894 16 C -0.175 4.175 17 N -0.439 5.439 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.197 1.197 21 H -0.191 1.191 22 H 0.165 0.835 23 H 0.140 0.860 24 H 0.165 0.835 25 H 0.143 0.857 26 H 0.126 0.874 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.997 -3.795 1.122 4.080 hybrid contribution 0.410 1.044 -0.677 1.310 sum 1.406 -2.751 0.445 3.121 Atomic orbital electron populations 1.81102 1.14754 1.11864 1.11329 1.29896 0.95751 0.90636 0.90623 1.18151 0.79165 1.07552 0.95266 1.19741 1.10503 0.93259 0.95530 1.20855 0.96741 0.97410 0.93764 1.20450 1.10021 0.95416 0.96558 1.19868 1.08313 0.97431 0.91528 1.18605 0.75070 0.72743 0.88113 1.93152 1.30740 1.95801 1.97056 1.93120 1.91260 1.45638 1.86141 1.93122 1.85738 1.57971 1.80321 1.21104 1.03560 0.95021 0.96251 1.17669 0.89634 0.93483 0.90323 1.19778 1.21519 0.91173 1.17868 0.89417 1.26624 0.93408 1.04544 0.92906 1.69817 1.14545 1.32356 1.27194 0.85398 0.79487 0.76902 0.79322 1.17915 1.19728 1.19076 0.83472 0.85969 0.83478 0.85746 0.87364 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.06 18.54 20.01 0.37 -19.69 15 2 C 0.25 8.41 15.01 89.44 1.34 9.76 15 3 C 0.04 1.08 5.20 28.04 0.15 1.23 15 4 C -0.19 -7.00 5.15 -19.40 -0.10 -7.10 15 5 C -0.07 -2.38 9.66 22.22 0.21 -2.16 15 6 C -0.21 -7.70 9.41 22.46 0.21 -7.49 15 7 C -0.17 -7.28 5.45 -19.92 -0.11 -7.39 15 8 C 0.51 20.29 3.36 71.24 0.24 20.53 15 9 F -0.19 -7.39 17.30 44.97 0.78 -6.61 15 10 F -0.18 -6.53 16.45 44.97 0.74 -5.79 15 11 F -0.19 -7.87 16.45 44.97 0.74 -7.13 15 12 C -0.14 -6.68 8.03 22.73 0.18 -6.50 15 13 C 0.09 4.19 5.56 -21.29 -0.12 4.07 15 14 C -0.47 -21.86 8.13 23.46 0.19 -21.67 15 15 H 0.09 3.84 6.67 -2.91 -0.02 3.82 15 16 C 0.04 1.91 5.16 85.26 0.44 2.35 15 17 N -0.81 -38.92 10.97 21.83 0.24 -38.68 15 18 Si 0.97 35.47 29.59 68.60 2.03 37.50 15 19 H -0.25 -8.81 7.11 99.48 0.71 -8.11 15 20 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 22 H 0.15 2.81 8.05 -2.39 -0.02 2.79 15 23 H 0.12 3.42 7.07 -2.39 -0.02 3.41 15 24 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 25 H 0.12 4.08 7.59 -2.91 -0.02 4.06 15 26 H 0.11 5.61 5.75 -2.91 -0.02 5.59 15 27 H 0.29 12.77 8.30 -92.71 -0.77 12.00 15 Total: -1.00 -54.69 262.21 8.77 -45.92 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.23 Total: 8.86 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 2.64 Total: -14.37 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.61 Total: -58.38 kcal Atomic # 9 Polarization: -21.79 SS G_CDS: 2.26 Total: -19.53 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -54.69 8.77 -45.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368666.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.066 kcal (2) G-P(sol) polarization free energy of solvation -54.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds