Wall clock time and date at job start Mon Mar 30 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47712 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00402 * 2 1 3 5 5 H 1.08006 * 120.00085 * 120.00176 * 4 2 1 6 6 C 1.37872 * 120.00116 * 299.99682 * 4 2 1 7 7 N 1.31512 * 119.99843 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00363 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46763 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47201 * 119.99904 * 8 6 4 11 11 H 1.48495 * 109.47066 * 240.00166 * 8 6 4 12 12 C 1.50702 * 109.47153 * 240.00224 * 2 1 3 13 13 O 1.21363 * 120.00210 * 270.00216 * 12 2 1 14 14 C 1.46355 * 120.00153 * 89.72308 * 12 2 1 15 15 C 1.36490 * 123.52956 * 0.30315 * 14 12 2 16 16 S 1.70450 * 110.76551 * 179.97438 * 15 14 12 17 17 C 1.75482 * 92.49219 * 0.02562 * 16 15 14 18 18 N 1.48036 * 124.64861 * 180.02562 * 17 16 15 19 19 O 1.21806 * 119.99762 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00197 * 359.96885 * 18 17 16 21 21 C 1.32630 * 110.69763 * 359.70943 * 17 16 15 22 22 H 1.09003 * 109.47035 * 299.99578 * 1 2 3 23 23 H 1.08994 * 109.47204 * 59.99725 * 1 2 3 24 24 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 25 25 H 0.97003 * 120.00587 * 179.97438 * 7 6 4 26 26 H 1.07997 * 124.61907 * 0.02562 * 15 14 12 27 27 H 1.07999 * 123.44517 * 180.28589 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.1485 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.2346 -1.9067 -1.2005 14 6 2.2705 0.0413 -2.4635 15 6 2.0678 1.3862 -2.5776 16 16 2.4467 1.9232 -4.1503 17 6 2.8891 0.3090 -4.6775 18 7 3.3594 -0.0324 -6.0391 19 8 3.6450 -1.1842 -6.3138 20 8 3.4607 0.8384 -6.8846 21 6 2.7508 -0.5621 -3.6870 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7082 1.1607 3.4844 26 1 1.7162 2.0236 -1.7798 27 1 2.9713 -1.6148 -3.7849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048259196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:13 Heat of formation + Delta-G solvation = -12.590351 kcal Electronic energy + Delta-G solvation = -15981.849888 eV Core-core repulsion = 13028.079977 eV Total energy + Delta-G solvation = -2953.769910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13708 -39.35895 -37.01161 -36.54485 -34.02541 -31.60370 -30.26475 -26.60638 -25.37665 -25.30467 -22.69597 -20.89395 -19.86759 -18.55058 -18.18230 -17.69088 -16.88770 -16.32651 -15.52479 -14.89048 -14.23820 -13.86377 -13.52015 -13.05886 -12.94841 -12.61251 -11.79530 -11.71665 -11.59477 -11.42136 -11.27647 -11.19911 -10.91916 -10.81175 -10.46489 -10.22622 -9.76396 -9.18968 -8.85823 -8.83583 -8.53304 -6.21686 -4.27304 -0.36327 0.40782 0.83728 1.21570 1.57120 1.67543 3.20501 3.29025 3.32700 3.38001 4.24987 4.41444 4.62539 4.92982 5.03408 5.12269 5.50179 5.60979 6.12505 6.24400 6.49067 6.64079 6.76391 7.25028 7.49065 7.57530 7.80795 8.01155 8.32361 8.77707 9.38938 10.85221 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.042384 B = 0.005056 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.469806 B = 5536.339528 C = 5900.688180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.012 3.988 3 H 0.051 0.949 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.416 3.584 13 O -0.451 6.451 14 C -0.183 4.183 15 C -0.152 4.152 16 S 0.302 5.698 17 C -0.210 4.210 18 N 0.064 4.936 19 O -0.149 6.149 20 O -0.161 6.161 21 C 0.012 3.988 22 H 0.097 0.903 23 H 0.013 0.987 24 H 0.035 0.965 25 H 0.263 0.737 26 H 0.203 0.797 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 4.780 -10.869 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.007 4.007 3 H 0.068 0.932 4 C -0.548 4.548 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.325 6.325 14 C -0.198 4.198 15 C -0.291 4.291 16 S 0.567 5.433 17 C -0.409 4.409 18 N 0.584 4.416 19 O -0.367 6.367 20 O -0.376 6.376 21 C -0.023 4.023 22 H 0.116 0.884 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.220 0.780 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.713 5.855 -10.812 12.316 hybrid contribution 0.418 -1.812 1.252 2.242 sum 1.131 4.043 -9.560 10.441 Atomic orbital electron populations 1.21713 0.95590 1.00415 1.01172 1.19141 0.94592 0.97013 0.89975 0.93164 1.21069 1.31751 1.12770 0.89190 0.91341 1.24924 0.94815 0.94941 0.99174 1.69846 1.36553 1.22879 1.23793 0.86400 0.78775 0.79789 0.82363 1.19524 1.20886 1.20807 1.22902 0.72613 0.88415 0.86956 1.90442 1.39845 1.17092 1.85142 1.21449 1.07265 0.93921 0.97123 1.26741 0.99776 0.99776 1.02787 1.83315 1.58873 1.00509 1.00567 1.25865 1.23339 1.02893 0.88812 1.42546 0.97618 1.00555 1.00864 1.94579 1.52309 1.04893 1.84881 1.94552 1.57798 1.43273 1.41935 1.21661 0.89440 1.02056 0.89133 0.88420 0.96801 0.94543 0.92730 0.77992 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.95 37.16 0.33 -2.48 15 2 C 0.01 0.26 2.22 -92.92 -0.21 0.06 15 3 H 0.05 1.10 6.84 -51.93 -0.36 0.75 15 4 C -0.51 -13.39 8.32 -34.44 -0.29 -13.68 15 5 H 0.07 1.89 7.14 -52.48 -0.37 1.51 15 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 15 7 N -0.89 -23.41 11.32 55.43 0.63 -22.79 15 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 15 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 12 C 0.42 8.51 6.17 -31.04 -0.19 8.32 15 13 O -0.45 -10.45 16.40 5.49 0.09 -10.36 15 14 C -0.18 -2.91 5.97 -104.75 -0.63 -3.54 15 15 C -0.15 -1.91 10.21 30.10 0.31 -1.60 15 16 S 0.30 3.24 22.78 -107.50 -2.45 0.79 15 17 C -0.21 -2.90 7.43 -11.52 -0.09 -2.99 15 18 N 0.06 0.96 4.46 33.24 0.15 1.11 15 19 O -0.15 -2.36 18.91 -29.46 -0.56 -2.91 15 20 O -0.16 -2.40 19.05 -29.46 -0.56 -2.96 15 21 C 0.01 0.17 9.68 -38.96 -0.38 -0.20 15 22 H 0.10 2.30 6.07 -51.93 -0.32 1.99 15 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 15 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 15 26 H 0.20 2.26 7.03 -52.49 -0.37 1.89 15 27 H 0.18 2.57 8.00 -52.49 -0.42 2.15 15 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -28.50 267.69 -6.73 -35.23 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -1.81 Total: -3.14 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.23 Total: -14.57 kcal Atomic # 7 Polarization: -22.45 SS G_CDS: 0.78 Total: -21.67 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.03 Total: -16.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.45 Total: 0.79 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.50 -6.73 -35.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.639 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds