Wall clock time and date at job start Mon Mar 30 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47712 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00402 * 2 1 3 5 5 H 1.08006 * 120.00085 * 120.00176 * 4 2 1 6 6 C 1.37872 * 120.00116 * 299.99682 * 4 2 1 7 7 N 1.31512 * 119.99843 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00363 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46763 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47201 * 119.99904 * 8 6 4 11 11 H 1.48495 * 109.47066 * 240.00166 * 8 6 4 12 12 C 1.50702 * 109.47153 * 240.00224 * 2 1 3 13 13 O 1.21363 * 120.00210 * 270.00216 * 12 2 1 14 14 C 1.46355 * 120.00153 * 89.72308 * 12 2 1 15 15 C 1.36490 * 123.52956 * 0.30315 * 14 12 2 16 16 S 1.70450 * 110.76551 * 179.97438 * 15 14 12 17 17 C 1.75482 * 92.49219 * 0.02562 * 16 15 14 18 18 N 1.48036 * 124.64861 * 180.02562 * 17 16 15 19 19 O 1.21806 * 119.99762 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00197 * 359.96885 * 18 17 16 21 21 C 1.32630 * 110.69763 * 359.70943 * 17 16 15 22 22 H 1.09003 * 109.47035 * 299.99578 * 1 2 3 23 23 H 1.08994 * 109.47204 * 59.99725 * 1 2 3 24 24 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 25 25 H 0.97003 * 120.00587 * 179.97438 * 7 6 4 26 26 H 1.07997 * 124.61907 * 0.02562 * 15 14 12 27 27 H 1.07999 * 123.44517 * 180.28589 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.1485 -2.2858 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.2346 -1.9067 -1.2005 14 6 2.2705 0.0413 -2.4635 15 6 2.0678 1.3862 -2.5776 16 16 2.4467 1.9232 -4.1503 17 6 2.8891 0.3090 -4.6775 18 7 3.3594 -0.0324 -6.0391 19 8 3.6450 -1.1842 -6.3138 20 8 3.4607 0.8384 -6.8846 21 6 2.7508 -0.5621 -3.6870 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7082 1.1607 3.4844 26 1 1.7162 2.0236 -1.7798 27 1 2.9713 -1.6148 -3.7849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048259196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:13 Heat of formation + Delta-G solvation = -28.188031 kcal Electronic energy + Delta-G solvation = -15982.526254 eV Core-core repulsion = 13028.079977 eV Total energy + Delta-G solvation = -2954.446277 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.28850 -40.81954 -38.31513 -37.72595 -35.88293 -33.11032 -31.79179 -27.75976 -27.29753 -26.69830 -24.13216 -22.27171 -20.99186 -19.85581 -19.45482 -18.83941 -18.53908 -17.73519 -17.02378 -16.65624 -15.76012 -15.42815 -14.67662 -14.56383 -14.27799 -14.11833 -13.51455 -13.06447 -12.90277 -12.77300 -12.68477 -12.64600 -12.50076 -12.46153 -12.26818 -12.12960 -11.08845 -10.84508 -10.61817 -10.33536 -9.86665 -8.19469 -6.30384 -1.48055 -0.62045 -0.37273 0.14880 0.44729 0.49931 1.37356 1.41525 1.52215 1.88661 2.39605 3.07637 3.13558 3.49927 3.76755 3.87650 4.37368 4.43108 4.67080 4.79994 4.95249 4.97594 5.02005 5.46599 5.67353 5.92104 6.17677 6.30399 6.69358 6.77952 7.37635 8.85595 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.042384 B = 0.005056 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.469806 B = 5536.339528 C = 5900.688180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 H 0.060 0.940 4 C -0.535 4.535 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.421 3.579 13 O -0.495 6.495 14 C -0.215 4.215 15 C -0.137 4.137 16 S 0.421 5.579 17 C -0.229 4.229 18 N 0.064 4.936 19 O -0.185 6.185 20 O -0.144 6.144 21 C 0.007 3.993 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.222 0.778 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 7.160 -11.696 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.014 4.014 3 H 0.078 0.922 4 C -0.573 4.573 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.299 3.701 13 O -0.373 6.373 14 C -0.229 4.229 15 C -0.276 4.276 16 S 0.687 5.313 17 C -0.428 4.428 18 N 0.582 4.418 19 O -0.394 6.394 20 O -0.364 6.364 21 C -0.028 4.028 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.239 0.761 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.529 8.183 -11.639 14.238 hybrid contribution 0.462 -2.352 1.437 2.795 sum 0.991 5.831 -10.202 11.793 Atomic orbital electron populations 1.21557 0.94902 0.99520 1.02007 1.19147 0.95241 0.97148 0.89908 0.92236 1.21256 1.32087 1.12560 0.91395 0.93908 1.25478 0.95050 0.95631 1.01131 1.69900 1.36709 1.23276 1.24413 0.85650 0.78363 0.78716 0.79833 1.20551 1.19791 1.20283 1.22770 0.71323 0.87885 0.88095 1.90421 1.42084 1.18775 1.86025 1.20754 1.11497 0.94931 0.95731 1.27087 0.96926 0.98614 1.05001 1.83073 1.54860 0.96423 0.96968 1.26079 1.23843 1.05025 0.87898 1.42668 0.97449 1.00414 1.01282 1.94598 1.54059 1.05304 1.85409 1.94523 1.56678 1.42987 1.42230 1.21456 0.89986 1.02056 0.89264 0.90438 0.92931 0.96264 0.92424 0.76113 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.95 71.98 0.64 -4.53 15 2 C 0.00 0.20 2.22 -12.29 -0.03 0.17 15 3 H 0.06 2.54 6.84 -2.39 -0.02 2.52 15 4 C -0.54 -28.69 8.32 25.60 0.21 -28.48 15 5 H 0.04 2.46 7.14 -2.91 -0.02 2.44 15 6 C 0.03 1.43 5.30 84.65 0.45 1.88 15 7 N -0.90 -47.07 11.32 21.45 0.24 -46.82 15 8 Si 0.95 42.42 29.54 68.60 2.03 44.45 15 9 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 12 C 0.42 17.40 6.17 27.80 0.17 17.57 15 13 O -0.50 -23.96 16.40 -3.29 -0.05 -24.01 15 14 C -0.21 -6.57 5.97 -19.94 -0.12 -6.69 15 15 C -0.14 -2.96 10.21 67.41 0.69 -2.27 15 16 S 0.42 7.13 22.78 -56.49 -1.29 5.84 15 17 C -0.23 -5.82 7.43 80.76 0.60 -5.22 15 18 N 0.06 1.82 4.46 -48.75 -0.22 1.60 15 19 O -0.18 -5.81 18.91 18.88 0.36 -5.45 15 20 O -0.14 -3.89 19.05 18.89 0.36 -3.53 15 21 C 0.01 0.20 9.68 22.74 0.22 0.42 15 22 H 0.08 3.61 6.07 -2.39 -0.01 3.60 15 23 H 0.05 1.76 8.14 -2.39 -0.02 1.75 15 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 25 H 0.27 13.16 8.31 -92.71 -0.77 12.39 15 26 H 0.22 3.96 7.03 -2.91 -0.02 3.94 15 27 H 0.17 5.02 8.00 -2.91 -0.02 5.00 15 Total: -1.00 -62.67 267.69 5.48 -57.18 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: 1.22 Total: -2.10 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 2.84 Total: -27.15 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.03 Total: -45.22 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: 0.66 Total: -33.00 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.29 Total: 5.84 kcal Total: -62.67 5.48 -57.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.997 kcal (2) G-P(sol) polarization free energy of solvation -62.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds