Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.46748 * 179.97438 * 11 10 9 13 13 C 1.36034 * 116.99708 * 179.97438 * 12 11 10 14 14 C 1.38491 * 120.06506 * 359.73529 * 13 12 11 15 15 C 1.38289 * 120.02574 * 179.71848 * 14 13 12 16 16 C 1.38356 * 120.16859 * 0.55328 * 15 14 13 17 17 Cl 1.73596 * 119.93680 * 179.74684 * 16 15 14 18 18 C 1.38329 * 120.13225 * 359.71940 * 16 15 14 19 19 C 1.38718 * 119.96768 * 0.02562 * 18 16 15 20 20 N 1.39954 * 120.08183 * 180.02562 * 19 18 16 21 21 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 23 23 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 24 24 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 25 25 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 26 26 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 27 27 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 28 28 H 1.07998 * 119.99121 * 359.97438 * 14 13 12 29 29 H 1.08009 * 119.91554 * 180.27310 * 15 14 13 30 30 H 1.08002 * 120.01291 * 180.02562 * 18 16 15 31 31 H 0.97004 * 120.00100 * 179.97438 * 20 19 18 32 32 H 0.96999 * 120.00289 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4088 -6.0733 -0.0018 13 6 1.8889 -7.3304 -0.0019 14 6 0.5161 -7.5133 0.0042 15 6 -0.0116 -8.7916 -0.0018 16 6 0.8286 -9.8907 -0.0022 17 17 0.1596 -11.4926 -0.0031 18 6 2.2008 -9.7158 -0.0026 19 6 2.7362 -8.4361 -0.0019 20 7 4.1242 -8.2564 -0.0028 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6045 0.8894 25 1 2.8719 -3.6044 -0.8905 26 1 0.8533 -5.0451 0.8886 27 1 0.8538 -5.0445 -0.8914 28 1 -0.1426 -6.6575 0.0094 29 1 -1.0825 -8.9322 -0.0015 30 1 2.8550 -10.5752 -0.0034 31 1 4.4973 -7.3610 -0.0027 32 1 4.7131 -9.0272 -0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578150.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = -58.680827 kcal Electronic energy + Delta-G solvation = -15738.288775 eV Core-core repulsion = 12916.309620 eV Total energy + Delta-G solvation = -2821.979155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21505 -38.78024 -37.33481 -35.92018 -35.30773 -33.63459 -30.95390 -29.64378 -28.53783 -25.52303 -23.49228 -23.00620 -21.86489 -19.17930 -18.55143 -18.02213 -17.75769 -17.16367 -16.50584 -15.95413 -15.87943 -15.18554 -15.03461 -14.68984 -14.18457 -14.14440 -13.71824 -13.11205 -13.09149 -12.75765 -12.73243 -12.45805 -12.12248 -12.09085 -11.78512 -11.52661 -11.46442 -11.27917 -11.24942 -10.55892 -9.49606 -8.28073 -8.21526 -6.32453 0.23404 0.45496 1.19775 1.41397 1.43989 1.51950 2.18734 2.43043 2.69608 2.99239 3.12405 3.79695 4.02402 4.07942 4.22489 4.25271 4.47240 4.47738 4.71145 4.79880 4.84920 4.93821 5.11093 5.27160 5.34017 5.48033 5.58519 5.67390 5.81463 6.17181 6.25735 6.62543 6.83266 6.99032 7.36852 8.90233 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.003340 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.198476 B = 8380.644584 C = 8924.093382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.094 4.094 11 C 0.074 3.926 12 O -0.326 6.326 13 C 0.041 3.959 14 C -0.160 4.160 15 C -0.135 4.135 16 C -0.029 4.029 17 Cl -0.069 7.069 18 C -0.164 4.164 19 C 0.199 3.801 20 N -0.862 5.862 21 H 0.265 0.735 22 H -0.001 1.001 23 H -0.001 1.001 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.407 0.593 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -20.901 0.001 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.132 4.132 11 C -0.001 4.001 12 O -0.240 6.240 13 C -0.008 4.008 14 C -0.180 4.180 15 C -0.156 4.156 16 C -0.056 4.056 17 Cl -0.040 7.040 18 C -0.188 4.188 19 C 0.093 3.907 20 N -0.404 5.404 21 H 0.073 0.927 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.236 0.764 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.168 -20.865 0.001 21.278 hybrid contribution 0.085 1.013 0.001 1.017 sum 4.252 -19.852 0.001 20.302 Atomic orbital electron populations 1.70072 1.07728 1.27967 1.51390 1.25954 0.95784 1.03313 0.94626 0.85501 0.78286 0.78082 0.79203 1.19185 1.20828 1.19174 1.21616 0.93643 0.92169 1.50965 0.92068 1.18910 0.94206 0.92242 0.95557 1.21406 0.98745 0.91197 1.01852 1.22830 0.91703 0.84298 1.01291 1.85949 1.36732 1.12003 1.89349 1.18868 0.92346 0.84381 1.05196 1.21184 0.93393 0.98710 1.04696 1.20764 1.00610 0.89994 1.04205 1.20539 0.93045 0.86009 1.05997 1.98349 1.85651 1.22941 1.97052 1.20374 0.93732 0.95297 1.09350 1.17069 0.85232 0.90485 0.97935 1.42287 1.01753 1.11895 1.84419 0.92660 0.98262 0.98273 0.92190 0.92199 0.91985 0.91998 0.84261 0.83727 0.82579 0.76429 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.81 5.52 30.60 0.17 -3.64 16 11 C 0.07 2.49 4.74 71.98 0.34 2.83 16 12 O -0.33 -10.27 9.38 -93.94 -0.88 -11.15 16 13 C 0.04 1.15 6.70 22.59 0.15 1.30 16 14 C -0.16 -4.18 9.04 22.34 0.20 -3.98 16 15 C -0.13 -3.10 9.82 22.31 0.22 -2.88 16 16 C -0.03 -0.62 6.32 22.32 0.14 -0.48 16 17 Cl -0.07 -1.31 28.95 -2.72 -0.08 -1.39 16 18 C -0.16 -3.37 9.67 22.41 0.22 -3.15 16 19 C 0.20 4.69 6.77 38.22 0.26 4.95 16 20 N -0.86 -15.97 9.09 -51.07 -0.46 -16.44 16 21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 22 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 23 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 24 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.06 2.03 7.65 -2.39 -0.02 2.01 16 27 H 0.06 2.03 7.68 -2.39 -0.02 2.01 16 28 H 0.14 3.53 6.30 -2.91 -0.02 3.51 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.41 7.97 8.19 -92.71 -0.76 7.21 16 32 H 0.41 5.09 8.85 -92.71 -0.82 4.27 16 Total: -1.00 -62.56 293.09 3.00 -59.56 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.43 Total: 12.61 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.54 Total: -33.32 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -0.18 Total: -71.96 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.88 Total: -11.15 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -62.56 3.00 -59.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578150.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.883 kcal (2) G-P(sol) polarization free energy of solvation -62.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds