Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.36032 * 117.00009 * 179.97438 * 12 11 10 14 14 C 1.38673 * 119.98308 * 359.73419 * 13 12 11 15 15 C 1.38112 * 120.03126 * 179.72239 * 14 13 12 16 16 C 1.38874 * 120.00298 * 0.54413 * 15 14 13 17 17 N 1.39931 * 120.02108 * 179.70435 * 16 15 14 18 18 C 1.38844 * 119.96449 * 359.72677 * 16 15 14 19 19 C 1.38218 * 119.97224 * 0.02562 * 18 16 15 20 20 Cl 1.73599 * 120.00247 * 179.97438 * 19 18 16 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.08001 * 119.98503 * 359.97433 * 14 13 12 29 29 H 1.08005 * 120.00311 * 180.27447 * 15 14 13 30 30 H 0.96996 * 120.00612 * 180.02562 * 17 16 15 31 31 H 0.97005 * 119.99546 * 0.02562 * 17 16 15 32 32 H 1.08004 * 120.01219 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 8 2.4087 -6.0733 0.0006 13 6 1.8887 -7.3303 0.0016 14 6 0.5139 -7.5116 0.0087 15 6 -0.0151 -8.7874 0.0039 16 6 0.8298 -9.8895 0.0034 17 7 0.2943 -11.1823 0.0048 18 6 2.2063 -9.7080 0.0020 19 6 2.7344 -8.4307 0.0016 20 17 4.4554 -8.2029 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 -0.1435 -6.6548 0.0138 29 1 -1.0860 -8.9280 0.0050 30 1 0.8846 -11.9519 0.0049 31 1 -0.6675 -11.3088 0.0058 32 1 2.8642 -10.5646 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = -57.340567 kcal Electronic energy + Delta-G solvation = -15739.645323 eV Core-core repulsion = 12917.724285 eV Total energy + Delta-G solvation = -2821.921037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09422 -38.95175 -37.43326 -36.03042 -34.67796 -33.50642 -31.79011 -29.41553 -28.17948 -25.44963 -23.82621 -22.76250 -21.89891 -19.20914 -18.53108 -17.93133 -17.79761 -17.14116 -16.49234 -16.05126 -15.58432 -15.18212 -14.85147 -14.76584 -14.14809 -14.11996 -13.78660 -13.36080 -12.98119 -12.86823 -12.61763 -12.40886 -12.36839 -11.97130 -11.76981 -11.54751 -11.51642 -11.21423 -10.68370 -10.56349 -9.83726 -8.21528 -8.16813 -6.31888 0.16023 0.54398 1.21898 1.41006 1.41345 1.54963 2.27609 2.44475 2.72215 3.06421 3.12283 3.80795 3.98785 4.09007 4.18619 4.24950 4.47850 4.49457 4.74261 4.84809 4.85707 4.99080 5.11190 5.18253 5.34764 5.48943 5.57058 5.68100 5.81973 6.21183 6.42937 6.60569 6.83504 7.06470 7.37140 8.90634 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.003816 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.402543 B = 7335.837386 C = 8091.489697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.096 4.096 11 C 0.072 3.928 12 O -0.326 6.326 13 C 0.057 3.943 14 C -0.155 4.155 15 C -0.153 4.153 16 C 0.195 3.805 17 N -0.863 5.863 18 C -0.158 4.158 19 C -0.038 4.038 20 Cl -0.069 7.069 21 H 0.265 0.735 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.408 0.592 31 H 0.410 0.590 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -23.519 0.014 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.002 4.002 12 O -0.240 6.240 13 C 0.010 3.990 14 C -0.175 4.175 15 C -0.175 4.175 16 C 0.089 3.911 17 N -0.406 5.406 18 C -0.182 4.182 19 C -0.066 4.066 20 Cl -0.041 7.041 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.171 0.829 30 H 0.238 0.762 31 H 0.240 0.760 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.608 -23.293 0.014 23.301 hybrid contribution 0.062 0.891 -0.001 0.893 sum 0.670 -22.402 0.013 22.412 Atomic orbital electron populations 1.70082 1.07638 1.27819 1.51514 1.25942 0.95817 1.03239 0.94617 0.85393 0.79000 0.78750 0.77887 1.18847 1.20213 1.20223 1.21664 0.93566 0.92250 1.50793 0.92355 1.18907 0.94114 0.92075 0.95659 1.21413 0.98801 0.91533 1.01611 1.22833 0.91674 0.84382 1.01342 1.86119 1.36598 1.12140 1.89179 1.18828 0.92276 0.84443 1.03482 1.21219 0.92582 0.99513 1.04181 1.20768 1.00787 0.90086 1.05904 1.17534 0.90996 0.87096 0.95456 1.42321 1.10541 1.02812 1.84903 1.20402 0.94335 0.94790 1.08637 1.20085 0.84266 0.92832 1.09391 1.98348 1.11076 1.97582 1.97050 0.92641 0.98089 0.98080 0.92551 0.92545 0.91787 0.91805 0.84183 0.82851 0.76188 0.75991 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.10 -4.15 5.52 30.60 0.17 -3.99 16 11 C 0.07 2.62 4.74 71.98 0.34 2.96 16 12 O -0.33 -11.72 9.59 -93.91 -0.90 -12.62 16 13 C 0.06 1.75 6.68 22.50 0.15 1.90 16 14 C -0.16 -4.01 9.03 22.34 0.20 -3.81 16 15 C -0.15 -3.01 9.89 22.39 0.22 -2.79 16 16 C 0.19 3.47 6.76 38.15 0.26 3.72 16 17 N -0.86 -8.41 9.10 -51.27 -0.47 -8.88 16 18 C -0.16 -3.29 9.67 22.41 0.22 -3.07 16 19 C -0.04 -1.04 6.33 22.40 0.14 -0.90 16 20 Cl -0.07 -1.94 28.50 -2.72 -0.08 -2.02 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.19 7.65 -2.39 -0.02 2.17 16 27 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 28 H 0.14 3.49 6.29 -2.91 -0.02 3.47 16 29 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.41 2.49 8.84 -92.71 -0.82 1.67 16 31 H 0.41 2.43 8.84 -92.70 -0.82 1.61 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -67.13 293.53 2.92 -64.21 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -0.49 Total: 3.52 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.54 Total: -34.86 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.18 Total: -64.82 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.90 Total: -12.62 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -67.13 2.92 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.867 kcal (2) G-P(sol) polarization free energy of solvation -67.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds