Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35936 * 116.99944 * 2 1 4 4 C 1.38505 * 120.08861 * 0.02562 * 3 2 1 5 5 C 1.38373 * 120.01937 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.89834 * 179.97438 * 5 4 3 7 7 C 1.38463 * 120.20068 * 0.02562 * 5 4 3 8 8 C 1.50706 * 119.90758 * 179.97438 * 7 5 4 9 9 C 1.38095 * 120.17991 * 0.02562 * 7 5 4 10 10 C 1.38966 * 119.97346 * 359.69629 * 9 7 5 11 11 N 1.39437 * 120.10051 * 180.29701 * 10 9 7 12 12 C 1.46500 * 119.99886 * 90.27598 * 11 10 9 13 13 C 1.36803 * 120.00135 * 270.28394 * 11 10 9 14 14 H 1.08004 * 119.99611 * 325.38145 * 13 11 10 15 15 C 1.38751 * 120.00388 * 145.39197 * 13 11 10 16 16 N 1.31621 * 120.00415 * 157.39334 * 15 13 11 17 17 Si 1.86803 * 119.99852 * 337.39314 * 15 13 11 18 18 H 1.48498 * 109.47143 * 95.40040 * 17 15 13 19 19 H 1.48497 * 109.47302 * 215.40150 * 17 15 13 20 20 H 1.48500 * 109.46962 * 335.39956 * 17 15 13 21 21 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47433 * 59.99602 * 1 2 3 23 23 H 1.08999 * 109.46834 * 299.99484 * 1 2 3 24 24 H 1.07998 * 119.99200 * 359.97438 * 4 3 2 25 25 H 1.08994 * 109.47183 * 90.00117 * 8 7 5 26 26 H 1.09001 * 109.46816 * 210.00065 * 8 7 5 27 27 H 1.08998 * 109.47554 * 329.99711 * 8 7 5 28 28 H 1.07997 * 120.01518 * 180.02562 * 9 7 5 29 29 H 1.08997 * 109.46863 * 90.60558 * 12 11 10 30 30 H 1.08996 * 109.47483 * 210.61096 * 12 11 10 31 31 H 1.09000 * 109.47262 * 330.61228 * 12 11 10 32 32 H 0.97000 * 120.00303 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2935 2.3740 0.0005 5 6 1.9232 3.6061 0.0011 6 17 0.9769 5.0615 0.0011 7 6 3.3058 3.6818 0.0005 8 6 3.9847 5.0272 0.0005 9 6 4.0642 2.5277 -0.0011 10 6 3.4395 1.2864 0.0042 11 7 4.2027 0.1195 0.0089 12 6 4.5988 -0.4916 1.2801 13 6 4.5817 -0.4547 -1.1736 14 1 3.9232 -0.4148 -2.0287 15 6 5.8120 -1.0884 -1.2742 16 7 6.0091 -1.9991 -2.2039 17 14 7.1885 -0.6492 -0.0903 18 1 7.1937 -1.6106 1.0414 19 1 8.4913 -0.7132 -0.8001 20 1 6.9748 0.7256 0.4290 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 0.2150 2.3190 0.0005 25 1 4.1488 5.3514 1.0281 26 1 4.9427 4.9507 -0.5137 27 1 3.3537 5.7527 -0.5129 28 1 5.1424 2.5898 -0.0011 29 1 3.8422 -1.2135 1.5875 30 1 5.5559 -0.9985 1.1570 31 1 4.6930 0.2825 2.0416 32 1 6.8693 -2.4418 -2.2745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049819872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = -7.410153 kcal Electronic energy + Delta-G solvation = -17020.477081 eV Core-core repulsion = 14200.721189 eV Total energy + Delta-G solvation = -2819.755892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23650 -38.80643 -37.91108 -36.83170 -33.90908 -32.78517 -30.96031 -28.66397 -27.98800 -26.83293 -25.55847 -22.89428 -21.71098 -19.25383 -18.83737 -17.63571 -17.48762 -16.71274 -16.40789 -15.81938 -15.24178 -14.99683 -14.93567 -14.58497 -14.48836 -14.36898 -13.60253 -13.26090 -13.10061 -13.01038 -12.69680 -12.60490 -12.51074 -12.10872 -12.09668 -11.77584 -11.58794 -11.44125 -10.71213 -9.69866 -9.06076 -8.87815 -8.23979 -5.65585 0.18952 0.38991 1.12211 1.29729 1.40618 1.52585 2.38325 2.47504 2.64422 2.96723 3.24298 3.81678 4.01802 4.12904 4.34790 4.39240 4.39637 4.48482 4.65000 4.67989 4.72350 4.76324 4.84925 4.89893 5.01058 5.14739 5.38367 5.50501 5.68606 5.88289 6.15645 6.49977 6.95140 7.59185 7.95738 8.95385 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.007629 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.193747 B = 3669.133399 C = 4433.496326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.105 3.895 4 C -0.190 4.190 5 C -0.016 4.016 6 Cl -0.055 7.055 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.095 4.095 10 C 0.146 3.854 11 N -0.575 5.575 12 C 0.113 3.887 13 C -0.258 4.258 14 H 0.034 0.966 15 C -0.018 4.018 16 N -0.945 5.945 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.304 1.304 20 H -0.254 1.254 21 H 0.110 0.890 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.157 0.843 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 13.023 8.117 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.057 3.943 4 C -0.210 4.210 5 C -0.043 4.043 6 Cl -0.026 7.026 7 C -0.109 4.109 8 C -0.164 4.164 9 C -0.115 4.115 10 C 0.052 3.948 11 N -0.295 5.295 12 C -0.030 4.030 13 C -0.386 4.386 14 H 0.052 0.948 15 C -0.215 4.215 16 N -0.588 5.588 17 Si 0.782 3.218 18 H -0.199 1.199 19 H -0.233 1.233 20 H -0.178 1.178 21 H 0.128 0.872 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.174 0.826 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.261 12.812 8.054 17.742 hybrid contribution 0.411 -0.325 -0.044 0.526 sum -8.849 12.487 8.010 17.274 Atomic orbital electron populations 1.23333 0.77210 1.05141 1.02125 1.86270 1.22768 1.26413 1.88321 1.19866 0.92280 0.84699 0.97504 1.21051 1.01016 0.89715 1.09187 1.20454 0.91058 0.87271 1.05540 1.98322 1.71848 1.35584 1.96891 1.19784 0.91429 0.96805 1.02901 1.20819 1.00601 0.91443 1.03556 1.21449 1.00221 0.90474 0.99374 1.17441 0.87775 0.88141 1.01441 1.41219 1.61408 1.24319 1.02557 1.21474 0.97935 0.97083 0.86473 1.18420 0.99027 1.31050 0.90145 0.94826 1.25998 0.99498 0.96847 0.99169 1.69995 1.24884 1.25384 1.38569 0.85740 0.77937 0.80034 0.78100 1.19859 1.23293 1.17779 0.87153 0.92067 0.91041 0.82552 0.89640 0.90894 0.90274 0.85322 0.95656 0.94551 0.91846 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.32 -12.70 10.24 -92.83 -0.95 -13.65 16 3 C 0.10 4.06 6.71 22.65 0.15 4.21 16 4 C -0.19 -5.85 8.81 22.37 0.20 -5.65 16 5 C -0.02 -0.48 6.32 22.36 0.14 -0.34 16 6 Cl -0.06 -1.28 27.27 -2.72 -0.07 -1.36 16 7 C -0.11 -3.29 5.88 -19.84 -0.12 -3.41 16 8 C -0.11 -2.48 9.61 71.24 0.68 -1.80 16 9 C -0.09 -3.57 9.62 22.41 0.22 -3.35 16 10 C 0.15 6.35 5.06 38.42 0.19 6.54 16 11 N -0.57 -28.73 2.30 -534.77 -1.23 -29.96 16 12 C 0.11 5.02 9.55 127.77 1.22 6.24 16 13 C -0.26 -15.28 9.92 84.04 0.83 -14.44 16 14 H 0.03 2.26 8.06 -2.91 -0.02 2.23 16 15 C -0.02 -1.09 5.32 84.85 0.45 -0.64 16 16 N -0.95 -59.65 13.97 21.64 0.30 -59.35 16 17 Si 0.95 45.97 24.92 68.60 1.71 47.68 16 18 H -0.27 -12.38 6.67 99.48 0.66 -11.72 16 19 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 20 H -0.25 -11.43 7.11 99.48 0.71 -10.73 16 21 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 22 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 23 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 24 H 0.16 3.87 6.30 -2.91 -0.02 3.85 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 27 H 0.08 1.65 6.89 -2.39 -0.02 1.63 16 28 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.68 2.85 -2.39 -0.01 1.67 16 31 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.98 282.52 5.93 -63.05 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.08 Total: 4.70 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.09 Total: -11.12 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -0.93 Total: -89.31 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.95 Total: -13.65 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.71 Total: 47.68 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.36 kcal Total: -68.98 5.93 -63.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049819872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds