Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48500 * 109.47086 * 240.00135 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47140 * 120.00347 * 3 2 1 7 7 C 1.37874 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.36000 * 117.00061 * 179.97438 * 12 11 10 14 14 C 1.38713 * 119.98096 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.04173 * 180.02562 * 14 13 12 16 16 C 1.38825 * 119.99166 * 0.23604 * 15 14 13 17 17 N 1.40016 * 120.02371 * 179.73968 * 16 15 14 18 18 C 1.38946 * 119.95758 * 359.51236 * 16 15 14 19 19 Cl 1.73598 * 120.02072 * 180.20714 * 18 16 15 20 20 C 1.38215 * 119.95853 * 0.51023 * 18 16 15 21 21 H 0.97005 * 119.99992 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47494 * 60.00525 * 9 7 2 23 23 H 1.09000 * 109.47104 * 299.99902 * 9 7 2 24 24 H 1.09004 * 109.47278 * 59.99926 * 10 9 7 25 25 H 1.09000 * 109.47007 * 299.99768 * 10 9 7 26 26 H 1.09004 * 109.46980 * 59.99910 * 11 10 9 27 27 H 1.09003 * 109.46863 * 300.00299 * 11 10 9 28 28 H 1.08005 * 119.97807 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.00085 * 179.97438 * 15 14 13 30 30 H 0.97000 * 119.99920 * 0.02562 * 17 16 15 31 31 H 0.96997 * 120.00210 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00108 * 179.74772 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4088 -6.0732 -0.0005 13 6 1.8890 -7.3300 0.0005 14 6 2.7343 -8.4298 0.0005 15 6 2.2078 -9.7067 0.0010 16 6 0.8317 -9.8898 -0.0035 17 7 0.2972 -11.1840 -0.0085 18 6 -0.0150 -8.7881 0.0018 19 17 -1.7360 -9.0153 0.0016 20 6 0.5140 -7.5112 0.0008 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8718 -3.6043 -0.8905 26 1 0.8533 -5.0451 -0.8897 27 1 0.8538 -5.0446 0.8903 28 1 3.8050 -8.2875 0.0002 29 1 2.8666 -10.5625 0.0006 30 1 0.8885 -11.9529 -0.0085 31 1 -0.6644 -11.3116 -0.0113 32 1 -0.1435 -6.6543 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050471239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -39.982149 kcal Electronic energy + Delta-G solvation = -15688.774913 eV Core-core repulsion = 12867.606593 eV Total energy + Delta-G solvation = -2821.168320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05921 -37.98590 -36.40130 -34.38611 -33.61364 -31.64088 -30.84186 -28.10699 -26.67837 -23.85008 -22.60884 -21.69816 -20.22944 -18.12903 -17.20944 -16.95324 -16.23307 -15.75253 -15.22739 -14.67458 -14.44583 -13.92302 -13.84852 -13.22950 -12.96706 -12.89949 -12.25519 -11.80208 -11.70942 -11.25305 -11.23746 -11.05934 -10.81929 -10.61262 -10.44136 -9.94686 -9.60232 -9.51594 -9.16213 -8.94541 -8.37286 -7.29179 -6.02542 -4.05271 1.08902 1.50668 2.07739 3.33599 3.37665 3.39884 3.52694 3.65953 3.71196 4.45439 4.67154 5.04942 5.12632 5.33506 5.42483 5.52088 5.56935 5.68184 5.84929 6.03995 6.05180 6.21790 6.49680 6.57586 6.72043 7.00699 7.19667 7.54262 7.60789 7.69885 7.73090 7.95977 8.37893 9.00804 9.58973 11.08915 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.003594 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.890423 B = 7788.997784 C = 8474.135449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.058 3.942 12 O -0.314 6.314 13 C 0.099 3.901 14 C -0.103 4.103 15 C -0.149 4.149 16 C 0.184 3.816 17 N -0.879 5.879 18 C -0.074 4.074 19 Cl -0.074 7.074 20 C -0.155 4.155 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.398 0.602 31 H 0.398 0.602 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -22.234 -0.006 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.016 4.016 12 O -0.228 6.228 13 C 0.051 3.949 14 C -0.122 4.122 15 C -0.172 4.172 16 C 0.079 3.921 17 N -0.421 5.421 18 C -0.105 4.105 19 Cl -0.046 7.046 20 C -0.175 4.175 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.504 -21.995 -0.007 22.001 hybrid contribution -0.232 0.619 -0.001 0.661 sum 0.273 -21.377 -0.008 21.378 Atomic orbital electron populations 1.69953 1.06079 1.26844 1.50583 1.25021 0.94879 0.99337 0.95200 0.86609 0.79540 0.82894 0.78685 1.20180 1.21279 1.20174 1.21154 0.93119 0.90756 1.50983 0.92495 1.19046 0.93842 0.90845 0.97537 1.21713 0.99859 0.91013 1.01948 1.23193 0.92280 0.85392 1.00783 1.86144 1.36698 1.11570 1.88414 1.18729 0.90677 0.85922 0.99524 1.20323 1.00021 0.89622 1.02281 1.20305 0.91922 0.97154 1.07773 1.17337 0.91697 0.84848 0.98175 1.42439 1.09883 1.03654 1.86143 1.20048 0.83739 0.93354 1.13389 1.98334 1.11759 1.97135 1.97340 1.21042 0.94829 0.96415 1.05239 0.92864 0.96305 0.96313 0.92197 0.92192 0.92429 0.92418 0.84619 0.84851 0.77363 0.77246 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.25 5.52 -26.73 -0.15 -2.40 16 11 C 0.06 1.03 4.74 37.16 0.18 1.21 16 12 O -0.31 -5.37 10.14 -19.74 -0.20 -5.57 16 13 C 0.10 1.47 6.69 -39.24 -0.26 1.21 16 14 C -0.10 -1.26 9.98 -39.45 -0.39 -1.66 16 15 C -0.15 -1.54 9.89 -39.41 -0.39 -1.93 16 16 C 0.18 2.02 6.76 -83.64 -0.57 1.45 16 17 N -0.88 -6.98 9.06 32.47 0.29 -6.68 16 18 C -0.07 -0.95 6.33 -39.33 -0.25 -1.19 16 19 Cl -0.07 -0.87 27.59 -51.86 -1.43 -2.30 16 20 C -0.16 -2.22 8.81 -39.42 -0.35 -2.56 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 27 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 28 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.40 2.14 8.84 -40.82 -0.36 1.78 16 31 H 0.40 3.00 7.50 -40.82 -0.31 2.69 16 32 H 0.14 2.02 6.29 -52.49 -0.33 1.69 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -30.54 291.88 -7.82 -38.36 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.87 Total: 0.18 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.73 Total: -18.93 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 1.03 Total: -32.76 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.20 Total: -5.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.43 Total: -2.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.54 -7.82 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050471239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.618 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds