Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48500 * 109.47086 * 240.00135 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47140 * 120.00347 * 3 2 1 7 7 C 1.37874 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.36000 * 117.00061 * 179.97438 * 12 11 10 14 14 C 1.38713 * 119.98096 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.04173 * 180.02562 * 14 13 12 16 16 C 1.38825 * 119.99166 * 0.23604 * 15 14 13 17 17 N 1.40016 * 120.02371 * 179.73968 * 16 15 14 18 18 C 1.38946 * 119.95758 * 359.51236 * 16 15 14 19 19 Cl 1.73598 * 120.02072 * 180.20714 * 18 16 15 20 20 C 1.38215 * 119.95853 * 0.51023 * 18 16 15 21 21 H 0.97005 * 119.99992 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47494 * 60.00525 * 9 7 2 23 23 H 1.09000 * 109.47104 * 299.99902 * 9 7 2 24 24 H 1.09004 * 109.47278 * 59.99926 * 10 9 7 25 25 H 1.09000 * 109.47007 * 299.99768 * 10 9 7 26 26 H 1.09004 * 109.46980 * 59.99910 * 11 10 9 27 27 H 1.09003 * 109.46863 * 300.00299 * 11 10 9 28 28 H 1.08005 * 119.97807 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.00085 * 179.97438 * 15 14 13 30 30 H 0.97000 * 119.99920 * 0.02562 * 17 16 15 31 31 H 0.96997 * 120.00210 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00108 * 179.74772 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4088 -6.0732 -0.0005 13 6 1.8890 -7.3300 0.0005 14 6 2.7343 -8.4298 0.0005 15 6 2.2078 -9.7067 0.0010 16 6 0.8317 -9.8898 -0.0035 17 7 0.2972 -11.1840 -0.0085 18 6 -0.0150 -8.7881 0.0018 19 17 -1.7360 -9.0153 0.0016 20 6 0.5140 -7.5112 0.0008 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8718 -3.6043 -0.8905 26 1 0.8533 -5.0451 -0.8897 27 1 0.8538 -5.0446 0.8903 28 1 3.8050 -8.2875 0.0002 29 1 2.8666 -10.5625 0.0006 30 1 0.8885 -11.9529 -0.0085 31 1 -0.6644 -11.3116 -0.0113 32 1 -0.1435 -6.6543 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050471239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -58.770650 kcal Electronic energy + Delta-G solvation = -15689.589643 eV Core-core repulsion = 12867.606593 eV Total energy + Delta-G solvation = -2821.983050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11056 -39.08108 -37.34365 -36.05138 -34.84237 -33.51885 -31.81069 -29.39809 -28.20702 -25.45462 -23.83955 -22.78040 -21.94352 -19.26709 -18.53003 -17.98590 -17.76469 -17.14138 -16.52161 -16.24871 -15.62193 -15.16171 -14.82611 -14.52184 -14.38032 -14.06187 -13.91292 -13.55061 -12.98984 -12.64224 -12.62938 -12.44067 -12.38670 -11.99057 -11.89407 -11.60557 -11.52394 -11.24819 -10.76531 -10.55784 -9.88580 -8.21136 -8.20239 -6.32390 0.14681 0.53356 1.14188 1.41585 1.44774 1.52687 2.28627 2.45075 2.70327 2.94493 3.12563 3.76023 4.02293 4.06283 4.15686 4.23985 4.46350 4.53735 4.65347 4.84100 4.85730 5.01324 5.10646 5.16289 5.28913 5.48520 5.61088 5.66755 5.81283 6.20309 6.39363 6.54085 6.83140 6.96345 7.36891 8.90752 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.003594 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.890423 B = 7788.997784 C = 8474.135449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.095 4.095 11 C 0.072 3.928 12 O -0.327 6.327 13 C 0.064 3.936 14 C -0.100 4.100 15 C -0.140 4.140 16 C 0.192 3.808 17 N -0.864 5.864 18 C -0.094 4.094 19 Cl -0.070 7.070 20 C -0.167 4.167 21 H 0.265 0.735 22 H -0.002 1.002 23 H -0.002 1.002 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.414 0.586 31 H 0.402 0.598 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -23.793 -0.007 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.133 4.133 11 C -0.003 4.003 12 O -0.241 6.241 13 C 0.017 3.983 14 C -0.119 4.119 15 C -0.163 4.163 16 C 0.086 3.914 17 N -0.407 5.407 18 C -0.126 4.126 19 Cl -0.042 7.042 20 C -0.187 4.187 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.189 0.811 30 H 0.245 0.755 31 H 0.232 0.768 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.806 -23.614 -0.008 23.683 hybrid contribution -0.680 0.921 -0.001 1.144 sum 1.127 -22.694 -0.009 22.722 Atomic orbital electron populations 1.70085 1.07789 1.27973 1.51390 1.25981 0.95803 1.03405 0.94568 0.85467 0.78251 0.77895 0.79253 1.19122 1.20792 1.19109 1.21618 0.93685 0.92113 1.51011 0.91974 1.18916 0.94199 0.92341 0.95472 1.21420 0.98747 0.91140 1.01973 1.22801 0.91765 0.84778 1.00967 1.86056 1.36413 1.12309 1.89354 1.19008 0.91428 0.85415 1.02413 1.20615 1.00638 0.89501 1.01143 1.20694 0.92034 0.97532 1.05994 1.17517 0.91957 0.85447 0.96506 1.42451 1.10517 1.03080 1.84647 1.20152 0.84322 0.93497 1.14620 1.98329 1.11416 1.97065 1.97370 1.21001 0.94702 0.96886 1.06112 0.92662 0.98359 0.98366 0.92090 0.92085 0.92341 0.92328 0.83053 0.81078 0.75513 0.76826 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.06 5.52 30.60 0.17 -3.89 16 11 C 0.07 2.63 4.74 71.98 0.34 2.97 16 12 O -0.33 -11.22 10.14 -93.55 -0.95 -12.17 16 13 C 0.06 1.88 6.69 22.49 0.15 2.03 16 14 C -0.10 -2.25 9.98 22.36 0.22 -2.03 16 15 C -0.14 -2.45 9.89 22.38 0.22 -2.23 16 16 C 0.19 3.75 6.76 38.14 0.26 4.01 16 17 N -0.86 -11.07 9.06 -51.19 -0.46 -11.54 16 18 C -0.09 -2.32 6.33 22.43 0.14 -2.18 16 19 Cl -0.07 -1.59 27.59 -2.72 -0.08 -1.67 16 20 C -0.17 -4.80 8.81 22.37 0.20 -4.61 16 21 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 22 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 24 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 2.09 7.66 -2.39 -0.02 2.07 16 27 H 0.06 2.10 7.66 -2.39 -0.02 2.08 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.41 2.87 8.84 -92.71 -0.82 2.05 16 31 H 0.40 5.01 7.50 -92.71 -0.70 4.32 16 32 H 0.13 3.87 6.29 -2.91 -0.02 3.86 16 Total: -1.00 -66.03 291.88 3.00 -63.03 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -0.37 Total: 7.48 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 2.55 Total: -34.95 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.18 Total: -68.11 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.95 Total: -12.17 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -66.03 3.00 -63.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050471239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.258 kcal (2) G-P(sol) polarization free energy of solvation -66.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds