Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.98024 * 2 1 4 4 C 1.38701 * 119.95761 * 180.02562 * 3 2 1 5 5 O 1.35924 * 120.04343 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46943 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47425 * 54.99450 * 7 6 5 9 9 N 1.46899 * 109.47380 * 294.99491 * 7 6 5 10 10 C 1.50699 * 109.47174 * 174.99573 * 7 6 5 11 11 H 1.07999 * 119.99934 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00440 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99526 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00304 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47212 * 60.00143 * 14 12 10 16 16 H 1.48507 * 109.47224 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47202 * 299.99926 * 14 12 10 18 18 C 1.38738 * 119.91880 * 359.97438 * 4 3 2 19 19 C 1.38126 * 119.95522 * 359.97438 * 18 4 3 20 20 C 1.38345 * 119.97676 * 179.97438 * 2 1 3 21 21 Cl 1.73605 * 119.95979 * 359.72660 * 20 2 1 22 22 H 1.08998 * 109.47135 * 270.02403 * 1 2 3 23 23 H 1.08999 * 109.46850 * 30.02744 * 1 2 3 24 24 H 1.08997 * 109.47106 * 150.02405 * 1 2 3 25 25 H 1.08001 * 120.02301 * 359.97434 * 3 2 1 26 26 H 1.08997 * 109.47009 * 299.99128 * 6 5 4 27 27 H 1.08993 * 109.47480 * 59.99649 * 6 5 4 28 28 H 1.00891 * 111.00446 * 176.04743 * 9 7 6 29 29 H 1.00897 * 110.99870 * 300.00239 * 9 7 6 30 30 H 0.97003 * 120.00077 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.02532 * 179.97438 * 18 4 3 32 32 H 1.07994 * 119.98203 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2654 2.3725 0.0000 6 6 5.6923 2.2961 -0.0012 7 6 6.2786 3.7093 -0.0010 8 1 5.8741 4.2705 0.8413 9 7 5.9248 4.3865 -1.2557 10 6 7.7786 3.6308 0.1217 11 1 8.2650 2.6691 0.1921 12 6 8.5300 4.7866 0.1431 13 7 7.9377 5.9577 0.0569 14 14 10.3893 4.6892 0.2944 15 1 10.9400 3.9245 -0.8532 16 1 10.9585 6.0609 0.2947 17 1 10.7476 4.0049 1.5628 18 6 4.2759 -0.0066 -0.0005 19 6 3.5822 -1.2010 0.0005 20 6 2.1982 -1.1984 0.0005 21 17 1.3286 -2.7009 0.0084 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5143 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6574 2.1321 -0.0004 26 1 6.0283 1.7629 0.8881 27 1 6.0270 1.7644 -0.8918 28 1 6.2454 5.3431 -1.2532 29 1 6.2888 3.8853 -2.0522 30 1 8.4663 6.7708 0.0715 31 1 5.3559 -0.0090 -0.0014 32 1 4.1200 -2.1375 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057516828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = -37.477294 kcal Electronic energy + Delta-G solvation = -16096.159047 eV Core-core repulsion = 13275.099346 eV Total energy + Delta-G solvation = -2821.059701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.90048 -37.68240 -36.14161 -34.64166 -32.57024 -31.44957 -29.73976 -27.35403 -26.80469 -25.08324 -22.54478 -21.44813 -19.95170 -17.67326 -16.58523 -16.05922 -15.98076 -15.43805 -14.79453 -14.27886 -14.16491 -13.78875 -13.23013 -13.09072 -12.72273 -12.48007 -12.22510 -12.09254 -11.94012 -11.33598 -11.18405 -11.02727 -10.93170 -10.77054 -10.51097 -10.10496 -10.04333 -9.64213 -8.79684 -8.70904 -7.82610 -7.23347 -6.19062 -4.37729 1.31764 1.41413 2.24916 3.17576 3.23513 3.24609 3.73968 3.75597 4.26820 4.79112 4.83823 5.04242 5.18098 5.36957 5.44294 5.55796 5.63393 5.86842 5.90187 5.92514 6.03451 6.20614 6.30231 6.40454 6.52556 6.69093 6.84553 7.48530 7.61150 7.88848 7.98640 8.58480 8.87095 9.08369 9.35844 10.79277 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.047883 B = 0.003966 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.613032 B = 7058.164449 C = 7535.161457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.153 4.153 4 C 0.158 3.842 5 O -0.293 6.293 6 C 0.073 3.927 7 C 0.216 3.784 8 H 0.047 0.953 9 N -0.846 5.846 10 C -0.559 4.559 11 H 0.056 0.944 12 C 0.069 3.931 13 N -0.888 5.888 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.211 4.211 19 C -0.064 4.064 20 C -0.090 4.090 21 Cl -0.084 7.084 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.138 0.862 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.355 0.645 29 H 0.310 0.690 30 H 0.268 0.732 31 H 0.137 0.863 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -12.158 -0.428 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.039 4.039 3 C -0.172 4.172 4 C 0.109 3.891 5 O -0.204 6.204 6 C -0.002 4.002 7 C 0.106 3.894 8 H 0.065 0.935 9 N -0.376 5.376 10 C -0.598 4.598 11 H 0.075 0.925 12 C -0.134 4.134 13 N -0.526 5.526 14 Si 0.729 3.271 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.201 1.201 18 C -0.230 4.230 19 C -0.083 4.083 20 C -0.117 4.117 21 Cl -0.056 7.056 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.156 0.844 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.171 0.829 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.575 -11.987 -0.196 16.665 hybrid contribution 2.400 -0.249 0.009 2.413 sum -9.176 -12.236 -0.187 15.295 Atomic orbital electron populations 1.20855 0.90289 1.03366 1.02853 1.19457 0.96347 0.90640 0.97494 1.20249 0.91280 0.97945 1.07746 1.19316 0.92011 0.86091 0.91637 1.86308 1.22300 1.25854 1.85975 1.23331 0.75036 1.02281 0.99509 1.18923 0.91779 0.87225 0.91515 0.93461 1.59425 1.65910 1.08478 1.03755 1.21672 0.92095 0.93155 1.52907 0.92539 1.24987 0.99230 0.95136 0.94072 1.69748 1.36034 0.97527 1.49330 0.86510 0.84538 0.77272 0.78830 1.20133 1.21040 1.20056 1.21306 1.00939 0.91540 1.09207 1.20756 0.91731 0.98394 0.97441 1.20508 0.92084 0.86087 1.13001 1.98315 1.77026 1.32843 1.97390 0.90668 0.90974 0.90886 0.84436 0.92817 0.93172 0.82928 0.88185 0.92211 0.84505 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.61 36.01 0.35 -0.84 16 2 C -0.04 -0.51 5.88 -104.61 -0.62 -1.12 16 3 C -0.15 -2.30 9.64 -39.44 -0.38 -2.68 16 4 C 0.16 2.69 6.69 -39.23 -0.26 2.42 16 5 O -0.29 -5.88 10.08 -19.50 -0.20 -6.08 16 6 C 0.07 1.51 4.27 37.16 0.16 1.67 16 7 C 0.22 5.31 2.99 -68.87 -0.21 5.10 16 8 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 9 N -0.85 -20.27 9.14 -5.65 -0.05 -20.32 16 10 C -0.56 -14.53 8.73 -34.44 -0.30 -14.83 16 11 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 13 N -0.89 -24.11 11.54 55.43 0.64 -23.47 16 14 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 18 C -0.21 -3.22 9.04 -39.44 -0.36 -3.57 16 19 C -0.06 -0.87 9.82 -39.57 -0.39 -1.26 16 20 C -0.09 -1.20 6.31 -39.48 -0.25 -1.45 16 21 Cl -0.08 -0.98 27.29 -51.86 -1.42 -2.39 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 24 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 25 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 27 H 0.05 0.99 7.66 -51.93 -0.40 0.59 16 28 H 0.35 9.07 7.08 -39.30 -0.28 8.79 16 29 H 0.31 7.04 8.99 -39.29 -0.35 6.69 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.14 2.00 6.30 -52.49 -0.33 1.67 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 288.39 15.07 4.35 4.35 Total: -1.00 -26.89 288.39 -7.82 -34.70 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -3.77 Total: 12.78 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.35 Total: -14.84 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.59 Total: -43.79 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.20 Total: -6.08 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.42 Total: -2.39 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.89 -7.82 -34.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057516828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.775 kcal (2) G-P(sol) polarization free energy of solvation -26.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds