Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.98024 * 2 1 4 4 C 1.38701 * 119.95761 * 180.02562 * 3 2 1 5 5 O 1.35924 * 120.04343 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46943 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47425 * 54.99450 * 7 6 5 9 9 N 1.46899 * 109.47380 * 294.99491 * 7 6 5 10 10 C 1.50699 * 109.47174 * 174.99573 * 7 6 5 11 11 H 1.07999 * 119.99934 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00440 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99526 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00304 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47212 * 60.00143 * 14 12 10 16 16 H 1.48507 * 109.47224 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47202 * 299.99926 * 14 12 10 18 18 C 1.38738 * 119.91880 * 359.97438 * 4 3 2 19 19 C 1.38126 * 119.95522 * 359.97438 * 18 4 3 20 20 C 1.38345 * 119.97676 * 179.97438 * 2 1 3 21 21 Cl 1.73605 * 119.95979 * 359.72660 * 20 2 1 22 22 H 1.08998 * 109.47135 * 270.02403 * 1 2 3 23 23 H 1.08999 * 109.46850 * 30.02744 * 1 2 3 24 24 H 1.08997 * 109.47106 * 150.02405 * 1 2 3 25 25 H 1.08001 * 120.02301 * 359.97434 * 3 2 1 26 26 H 1.08997 * 109.47009 * 299.99128 * 6 5 4 27 27 H 1.08993 * 109.47480 * 59.99649 * 6 5 4 28 28 H 1.00891 * 111.00446 * 176.04743 * 9 7 6 29 29 H 1.00897 * 110.99870 * 300.00239 * 9 7 6 30 30 H 0.97003 * 120.00077 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.02532 * 179.97438 * 18 4 3 32 32 H 1.07994 * 119.98203 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2654 2.3725 0.0000 6 6 5.6923 2.2961 -0.0012 7 6 6.2786 3.7093 -0.0010 8 1 5.8741 4.2705 0.8413 9 7 5.9248 4.3865 -1.2557 10 6 7.7786 3.6308 0.1217 11 1 8.2650 2.6691 0.1921 12 6 8.5300 4.7866 0.1431 13 7 7.9377 5.9577 0.0569 14 14 10.3893 4.6892 0.2944 15 1 10.9400 3.9245 -0.8532 16 1 10.9585 6.0609 0.2947 17 1 10.7476 4.0049 1.5628 18 6 4.2759 -0.0066 -0.0005 19 6 3.5822 -1.2010 0.0005 20 6 2.1982 -1.1984 0.0005 21 17 1.3286 -2.7009 0.0084 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5143 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6574 2.1321 -0.0004 26 1 6.0283 1.7629 0.8881 27 1 6.0270 1.7644 -0.8918 28 1 6.2454 5.3431 -1.2532 29 1 6.2888 3.8853 -2.0522 30 1 8.4663 6.7708 0.0715 31 1 5.3559 -0.0090 -0.0014 32 1 4.1200 -2.1375 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057516828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = -53.529473 kcal Electronic energy + Delta-G solvation = -16096.855122 eV Core-core repulsion = 13275.099346 eV Total energy + Delta-G solvation = -2821.755776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14957 -38.97952 -37.23926 -36.46327 -33.61797 -33.36304 -31.00842 -29.04737 -27.92808 -26.89583 -23.68200 -22.90575 -21.52718 -19.16146 -18.18656 -17.48178 -17.27918 -16.94626 -16.57886 -15.77683 -15.36253 -14.99566 -14.68561 -14.44369 -14.23760 -13.90496 -13.25791 -13.24624 -13.10922 -12.88069 -12.77953 -12.67340 -12.47082 -12.19144 -11.93012 -11.67735 -11.46552 -11.39177 -10.71124 -9.87607 -9.20804 -9.04048 -8.17499 -6.44284 0.21228 0.26342 1.21002 1.40615 1.41081 1.49478 2.24789 2.50018 2.60172 3.02777 3.75608 3.78553 4.06347 4.20443 4.25299 4.34354 4.39844 4.50702 4.66776 4.79833 4.87519 4.90982 5.06310 5.19777 5.33307 5.36345 5.48973 5.58099 5.65633 5.96461 6.47632 6.63727 6.89774 7.09629 7.33570 8.79426 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.047883 B = 0.003966 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.613032 B = 7058.164449 C = 7535.161457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.161 4.161 4 C 0.126 3.874 5 O -0.317 6.317 6 C 0.089 3.911 7 C 0.214 3.786 8 H 0.008 0.992 9 N -0.841 5.841 10 C -0.575 4.575 11 H 0.061 0.939 12 C 0.022 3.978 13 N -0.915 5.915 14 Si 0.967 3.033 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.216 4.216 19 C -0.063 4.063 20 C -0.092 4.092 21 Cl -0.064 7.064 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.344 0.656 29 H 0.317 0.683 30 H 0.269 0.731 31 H 0.139 0.861 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 -13.998 -0.569 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.179 4.179 4 C 0.079 3.921 5 O -0.230 6.230 6 C 0.014 3.986 7 C 0.103 3.897 8 H 0.026 0.974 9 N -0.369 5.369 10 C -0.614 4.614 11 H 0.080 0.920 12 C -0.179 4.179 13 N -0.554 5.554 14 Si 0.792 3.208 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.235 4.235 19 C -0.082 4.082 20 C -0.119 4.119 21 Cl -0.035 7.035 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.886 -13.859 -0.342 18.261 hybrid contribution 2.342 0.225 0.060 2.354 sum -9.544 -13.634 -0.282 16.645 Atomic orbital electron populations 1.20941 0.87980 1.04373 1.03978 1.19775 0.97973 0.89911 0.96086 1.20421 0.90651 0.99027 1.07842 1.19600 0.92752 0.85666 0.94088 1.86223 1.21641 1.27919 1.87249 1.22932 0.75910 0.99587 1.00164 1.18829 0.91618 0.88945 0.90304 0.97373 1.59395 1.65729 1.07878 1.03937 1.21977 0.92978 0.93503 1.52947 0.92048 1.25794 1.03626 0.94789 0.93670 1.69865 1.37564 0.98071 1.49892 0.85476 0.79176 0.77225 0.78937 1.19383 1.20899 1.19655 1.21377 1.01172 0.91598 1.09392 1.21005 0.92068 0.98638 0.96458 1.20713 0.92355 0.87049 1.11743 1.98325 1.76533 1.31433 1.97230 0.89341 0.89834 0.90059 0.84055 0.92214 0.92343 0.84129 0.87390 0.92186 0.84320 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.61 71.24 0.68 -1.38 16 2 C -0.04 -0.90 5.88 -19.86 -0.12 -1.02 16 3 C -0.16 -4.71 9.64 22.36 0.22 -4.50 16 4 C 0.13 4.27 6.69 22.50 0.15 4.42 16 5 O -0.32 -13.03 10.08 -92.70 -0.93 -13.96 16 6 C 0.09 3.72 4.27 71.98 0.31 4.03 16 7 C 0.21 10.77 2.99 44.17 0.13 10.90 16 8 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 9 N -0.84 -41.15 9.14 -171.80 -1.57 -42.72 16 10 C -0.57 -30.10 8.73 25.60 0.22 -29.88 16 11 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 12 C 0.02 1.16 5.38 84.65 0.46 1.62 16 13 N -0.92 -50.38 11.54 21.45 0.25 -50.14 16 14 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 C -0.22 -6.43 9.04 22.36 0.20 -6.22 16 19 C -0.06 -1.58 9.82 22.28 0.22 -1.36 16 20 C -0.09 -2.24 6.31 22.33 0.14 -2.10 16 21 Cl -0.06 -1.30 27.29 -2.72 -0.07 -1.38 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 24 H 0.08 1.32 6.90 -2.39 -0.02 1.30 16 25 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.06 2.36 7.66 -2.39 -0.02 2.35 16 27 H 0.06 2.30 7.66 -2.39 -0.02 2.28 16 28 H 0.34 18.07 7.08 -89.70 -0.63 17.44 16 29 H 0.32 14.56 8.99 -89.70 -0.81 13.76 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.14 3.97 6.30 -2.91 -0.02 3.95 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -57.19 288.39 2.02 -55.18 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.29 Total: 35.05 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 2.61 Total: -25.47 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -1.32 Total: -92.86 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.93 Total: -13.96 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.38 kcal Total: -57.19 2.02 -55.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057516828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.647 kcal (2) G-P(sol) polarization free energy of solvation -57.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds