Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 C 1.50704 * 109.47169 * 119.99451 * 2 1 3 5 5 H 1.07997 * 119.99913 * 120.00004 * 4 2 1 6 6 C 1.37876 * 120.00452 * 300.00967 * 4 2 1 7 7 N 1.31509 * 120.00284 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99791 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46898 * 90.00257 * 8 6 4 10 10 H 1.48496 * 109.47523 * 210.00252 * 8 6 4 11 11 H 1.48505 * 109.47118 * 330.00813 * 8 6 4 12 12 N 1.46499 * 109.47648 * 239.99751 * 2 1 3 13 13 C 1.46492 * 119.99919 * 300.00464 * 12 2 1 14 14 C 1.38469 * 119.99841 * 119.99621 * 12 2 1 15 15 C 1.36031 * 124.63013 * 180.02562 * 14 12 2 16 16 C 1.36955 * 114.73988 * 180.02562 * 15 14 12 17 17 C 1.36985 * 113.48958 * 359.97438 * 16 15 14 18 18 C 1.41457 * 125.31853 * 179.73461 * 17 16 15 19 19 O 1.21723 * 119.99876 * 0.02562 * 18 17 16 20 20 O 1.34985 * 120.00247 * 180.02562 * 18 17 16 21 21 S 1.70616 * 124.62910 * 0.04836 * 14 12 2 22 22 H 1.09002 * 109.47751 * 299.99831 * 1 2 3 23 23 H 1.08995 * 109.47137 * 60.00323 * 1 2 3 24 24 H 1.09004 * 109.46768 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00202 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47244 * 269.99555 * 13 12 2 27 27 H 1.09000 * 109.47485 * 29.99121 * 13 12 2 28 28 H 1.09002 * 109.47520 * 149.99960 * 13 12 2 29 29 H 1.07998 * 122.62539 * 0.02562 * 15 14 12 30 30 H 1.07998 * 123.25973 * 179.97438 * 16 15 14 31 31 H 0.96703 * 114.00274 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6255 1.2798 2.6542 9 1 -0.8024 0.8742 2.6993 10 1 0.9766 1.9954 3.9070 11 1 0.8486 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0931 -1.4279 14 6 2.8145 -0.0176 -2.1075 15 6 3.3179 -0.5651 -3.2465 16 6 4.0816 0.2845 -4.0019 17 6 4.1965 1.5392 -3.4644 18 6 4.9291 2.6080 -4.0318 19 8 5.5225 2.4489 -5.0827 20 8 4.9703 3.8043 -3.4080 21 16 3.2983 1.6114 -1.9551 22 1 -0.3635 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9030 -0.5279 4.4377 26 1 2.4158 -2.7377 -0.9715 27 1 0.6905 -2.3002 -0.9845 28 1 1.6240 -2.2853 -2.5001 29 1 3.1301 -1.5895 -3.5326 30 1 4.5482 -0.0066 -4.9314 31 1 5.4948 4.4717 -3.8713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070609627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -50.031308 kcal Electronic energy + Delta-G solvation = -16564.596936 eV Core-core repulsion = 13745.036558 eV Total energy + Delta-G solvation = -2819.560378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85558 -38.40464 -36.30935 -35.51271 -33.01431 -30.84945 -28.79880 -26.90430 -25.41407 -24.01011 -21.84329 -20.64354 -18.67627 -18.32421 -17.35955 -16.82379 -15.88673 -15.38587 -15.33317 -14.95965 -14.25078 -13.79281 -13.46994 -13.07754 -12.79429 -12.49021 -12.32491 -12.07535 -11.87881 -11.58493 -11.48160 -11.29832 -10.86013 -10.62128 -10.42227 -10.17350 -9.88693 -9.74744 -9.23395 -8.85609 -8.22963 -6.82822 -6.36620 -4.41320 0.94419 1.70422 2.34665 2.67337 3.05764 3.15815 3.20689 3.45346 3.55244 3.64321 4.12390 4.92036 5.38437 5.48818 5.69731 5.76629 5.85171 5.93257 6.02584 6.07799 6.14659 6.24799 6.38229 6.52561 6.60576 6.69464 6.76676 7.18495 7.45952 7.62734 8.17073 8.20799 8.65105 9.20633 10.75431 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.006609 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.978949 B = 4235.444288 C = 4790.197109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.234 3.766 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.879 3.121 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.547 5.547 13 C 0.097 3.903 14 C 0.155 3.845 15 C -0.310 4.310 16 C 0.037 3.963 17 C -0.377 4.377 18 C 0.564 3.436 19 O -0.542 6.542 20 O -0.513 6.513 21 S 0.218 5.782 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.270 0.730 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 3.502 -10.431 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.132 3.868 3 H 0.064 0.936 4 C -0.576 4.576 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.520 5.520 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.188 1.188 12 N -0.250 5.250 13 C -0.047 4.047 14 C -0.079 4.079 15 C -0.340 4.340 16 C 0.005 3.995 17 C -0.495 4.495 18 C 0.413 3.587 19 O -0.437 6.437 20 O -0.323 6.323 21 S 0.475 5.525 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.294 4.117 -9.050 10.026 hybrid contribution -0.023 -0.128 -0.963 0.972 sum -1.317 3.989 -10.013 10.859 Atomic orbital electron populations 1.22514 0.98147 1.01888 0.99862 1.19535 0.91001 0.93177 0.83095 0.93555 1.21068 1.33645 1.14928 0.87987 0.89847 1.24867 0.95407 0.96576 0.95533 1.69849 1.44220 1.39788 0.98153 0.86987 0.80732 0.83564 0.77944 1.20039 1.21589 1.18821 1.46559 1.47147 1.11092 1.20233 1.21667 1.01675 0.81074 1.00321 1.22639 0.93762 0.98501 0.92962 1.19674 1.12968 1.03006 0.98334 1.20224 0.92000 0.89668 0.97655 1.21669 1.22024 0.98722 1.07102 1.17988 0.77706 0.81322 0.81646 1.90897 1.45607 1.83543 1.23633 1.85095 1.70167 1.22986 1.54015 1.83488 1.46645 1.02817 1.19557 0.92563 0.94282 0.91897 0.92022 0.92360 0.90400 0.92072 0.84318 0.83901 0.74079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.65 37.16 0.32 -2.87 16 2 C 0.23 4.97 2.25 -69.08 -0.16 4.82 16 3 H 0.05 1.02 5.37 -51.93 -0.28 0.75 16 4 C -0.54 -13.67 8.95 -34.44 -0.31 -13.98 16 5 H 0.08 2.33 7.89 -52.49 -0.41 1.92 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 7 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 8 Si 0.88 19.85 24.37 -169.99 -4.14 15.70 16 9 H -0.27 -5.96 6.87 56.52 0.39 -5.57 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.66 6.53 56.52 0.37 -5.29 16 12 N -0.55 -10.23 2.85 -175.92 -0.50 -10.74 16 13 C 0.10 1.52 9.59 59.84 0.57 2.09 16 14 C 0.15 2.76 6.85 -15.34 -0.11 2.66 16 15 C -0.31 -4.93 9.40 -40.84 -0.38 -5.31 16 16 C 0.04 0.59 9.91 -40.50 -0.40 0.19 16 17 C -0.38 -6.40 6.25 -38.81 -0.24 -6.64 16 18 C 0.56 9.28 8.08 31.96 0.26 9.54 16 19 O -0.54 -9.88 17.45 -19.44 -0.34 -10.22 16 20 O -0.51 -6.94 13.29 -41.27 -0.55 -7.49 16 21 S 0.22 3.83 20.93 -107.50 -2.25 1.58 16 22 H 0.06 1.13 3.27 -51.93 -0.17 0.96 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.18 6.43 -51.93 -0.33 0.84 16 28 H 0.06 0.78 6.59 -51.93 -0.34 0.44 16 29 H 0.14 1.92 6.79 -52.49 -0.36 1.57 16 30 H 0.14 2.02 8.01 -52.49 -0.42 1.60 16 31 H 0.40 3.41 8.98 45.56 0.41 3.82 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -29.85 273.32 -5.71 -35.56 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.28 Total: 3.21 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.54 Total: -7.45 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.27 Total: -35.01 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.89 Total: -17.71 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.14 Total: 15.70 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -2.25 Total: 1.58 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.85 -5.71 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.474 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds