Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 C 1.50704 * 109.47169 * 119.99451 * 2 1 3 5 5 H 1.07997 * 119.99913 * 120.00004 * 4 2 1 6 6 C 1.37876 * 120.00452 * 300.00967 * 4 2 1 7 7 N 1.31509 * 120.00284 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99791 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46898 * 90.00257 * 8 6 4 10 10 H 1.48496 * 109.47523 * 210.00252 * 8 6 4 11 11 H 1.48505 * 109.47118 * 330.00813 * 8 6 4 12 12 N 1.46499 * 109.47648 * 239.99751 * 2 1 3 13 13 C 1.46492 * 119.99919 * 300.00464 * 12 2 1 14 14 C 1.38469 * 119.99841 * 119.99621 * 12 2 1 15 15 C 1.36031 * 124.63013 * 180.02562 * 14 12 2 16 16 C 1.36955 * 114.73988 * 180.02562 * 15 14 12 17 17 C 1.36985 * 113.48958 * 359.97438 * 16 15 14 18 18 C 1.41457 * 125.31853 * 179.73461 * 17 16 15 19 19 O 1.21723 * 119.99876 * 0.02562 * 18 17 16 20 20 O 1.34985 * 120.00247 * 180.02562 * 18 17 16 21 21 S 1.70616 * 124.62910 * 0.04836 * 14 12 2 22 22 H 1.09002 * 109.47751 * 299.99831 * 1 2 3 23 23 H 1.08995 * 109.47137 * 60.00323 * 1 2 3 24 24 H 1.09004 * 109.46768 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00202 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47244 * 269.99555 * 13 12 2 27 27 H 1.09000 * 109.47485 * 29.99121 * 13 12 2 28 28 H 1.09002 * 109.47520 * 149.99960 * 13 12 2 29 29 H 1.07998 * 122.62539 * 0.02562 * 15 14 12 30 30 H 1.07998 * 123.25973 * 179.97438 * 16 15 14 31 31 H 0.96703 * 114.00274 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6255 1.2798 2.6542 9 1 -0.8024 0.8742 2.6993 10 1 0.9766 1.9954 3.9070 11 1 0.8486 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0931 -1.4279 14 6 2.8145 -0.0176 -2.1075 15 6 3.3179 -0.5651 -3.2465 16 6 4.0816 0.2845 -4.0019 17 6 4.1965 1.5392 -3.4644 18 6 4.9291 2.6080 -4.0318 19 8 5.5225 2.4489 -5.0827 20 8 4.9703 3.8043 -3.4080 21 16 3.2983 1.6114 -1.9551 22 1 -0.3635 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9030 -0.5279 4.4377 26 1 2.4158 -2.7377 -0.9715 27 1 0.6905 -2.3002 -0.9845 28 1 1.6240 -2.2853 -2.5001 29 1 3.1301 -1.5895 -3.5326 30 1 4.5482 -0.0066 -4.9314 31 1 5.4948 4.4717 -3.8713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070609627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -70.184974 kcal Electronic energy + Delta-G solvation = -16565.470864 eV Core-core repulsion = 13745.036558 eV Total energy + Delta-G solvation = -2820.434306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10436 -39.78016 -37.66638 -36.78326 -34.83085 -32.50626 -30.10758 -28.20421 -27.22953 -25.41548 -23.11925 -22.21637 -19.98646 -19.62097 -18.89023 -18.46351 -17.40561 -16.67648 -16.62724 -16.49581 -15.68609 -15.28329 -14.90912 -14.63042 -14.16685 -14.10122 -13.63227 -13.53847 -13.20446 -13.16363 -12.89102 -12.52000 -12.45678 -12.19696 -11.86224 -11.64188 -11.55331 -11.35947 -10.86868 -10.72695 -9.55118 -8.38548 -8.20853 -6.46423 -0.37534 0.37087 1.02045 1.28156 1.35453 1.39091 1.43488 2.14377 2.18835 2.24414 2.52720 2.96016 4.05869 4.24149 4.35900 4.45199 4.51727 4.54727 4.63176 4.71992 4.83100 4.90401 4.97039 5.19959 5.32718 5.38954 5.44353 5.58428 5.88315 6.14849 6.38476 6.59462 7.03053 7.19808 8.77591 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.006609 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.978949 B = 4235.444288 C = 4790.197109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.042 0.958 4 C -0.534 4.534 5 H 0.043 0.957 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.934 3.066 9 H -0.257 1.257 10 H -0.296 1.296 11 H -0.244 1.244 12 N -0.560 5.560 13 C 0.096 3.904 14 C 0.136 3.864 15 C -0.296 4.296 16 C 0.039 3.961 17 C -0.383 4.383 18 C 0.567 3.433 19 O -0.563 6.563 20 O -0.509 6.509 21 S 0.199 5.801 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.270 0.730 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 4.412 -12.308 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.760 3.240 9 H -0.182 1.182 10 H -0.223 1.223 11 H -0.168 1.168 12 N -0.265 5.265 13 C -0.048 4.048 14 C -0.096 4.096 15 C -0.326 4.326 16 C 0.006 3.994 17 C -0.501 4.501 18 C 0.417 3.583 19 O -0.459 6.459 20 O -0.321 6.321 21 S 0.456 5.544 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -2.140 5.050 -10.963 12.258 hybrid contribution 0.383 -0.427 -0.474 0.744 sum -1.757 4.623 -11.437 12.461 Atomic orbital electron populations 1.22413 0.96124 1.02747 1.00705 1.19286 0.92466 0.92457 0.82424 0.94040 1.21284 1.32317 1.13587 0.90039 0.93905 1.25679 0.96884 0.99616 0.95158 1.69999 1.46615 1.42065 0.98798 0.86077 0.79711 0.80109 0.78094 1.18235 1.22332 1.16782 1.46428 1.48181 1.12015 1.19847 1.21792 1.01231 0.79400 1.02351 1.22819 0.94442 0.98611 0.93683 1.19935 1.11535 1.03934 0.97204 1.20503 0.91552 0.89160 0.98189 1.21901 1.21977 0.99581 1.06691 1.17935 0.77185 0.81902 0.81252 1.90891 1.46464 1.84073 1.24461 1.85053 1.70406 1.22721 1.53939 1.83486 1.47108 1.03445 1.20344 0.93340 0.91600 0.91195 0.92090 0.93819 0.90142 0.88794 0.82017 0.81940 0.71486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.65 71.98 0.62 -5.20 16 2 C 0.24 9.82 2.25 44.25 0.10 9.92 16 3 H 0.04 1.78 5.37 -2.38 -0.01 1.77 16 4 C -0.53 -27.54 8.95 25.60 0.23 -27.31 16 5 H 0.04 2.50 7.89 -2.91 -0.02 2.47 16 6 C 0.03 1.41 5.45 84.66 0.46 1.87 16 7 N -0.94 -54.66 13.96 21.45 0.30 -54.36 16 8 Si 0.93 40.39 24.37 68.60 1.67 42.06 16 9 H -0.26 -10.34 6.87 99.48 0.68 -9.66 16 10 H -0.30 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.24 -9.69 6.53 99.48 0.65 -9.04 16 12 N -0.56 -20.17 2.85 -710.50 -2.03 -22.20 16 13 C 0.10 2.85 9.59 127.77 1.22 4.08 16 14 C 0.14 4.60 6.85 83.13 0.57 5.17 16 15 C -0.30 -8.59 9.40 21.45 0.20 -8.39 16 16 C 0.04 1.12 9.91 21.67 0.21 1.34 16 17 C -0.38 -12.22 6.25 22.77 0.14 -12.07 16 18 C 0.57 17.51 8.08 68.61 0.55 18.06 16 19 O -0.56 -19.34 17.45 19.11 0.33 -19.00 16 20 O -0.51 -12.66 13.29 -59.03 -0.78 -13.44 16 21 S 0.20 6.70 20.93 -56.49 -1.18 5.51 16 22 H 0.05 1.81 3.27 -2.39 -0.01 1.81 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 2.38 6.66 -2.38 -0.02 2.37 16 25 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 26 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.08 2.32 6.43 -2.39 -0.02 2.30 16 28 H 0.09 2.13 6.59 -2.39 -0.02 2.11 16 29 H 0.16 3.89 6.79 -2.91 -0.02 3.87 16 30 H 0.16 4.06 8.01 -2.91 -0.02 4.04 16 31 H 0.43 6.14 8.98 -74.06 -0.67 5.48 16 Total: -1.00 -64.45 273.32 3.06 -61.38 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.43 Total: 12.59 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.32 Total: -12.54 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.73 Total: -76.56 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.45 Total: -32.45 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.67 Total: 42.06 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -1.18 Total: 5.51 kcal Total: -64.45 3.06 -61.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.802 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds