Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.38463 * 120.00339 * 240.00055 * 12 2 1 15 15 C 1.36028 * 124.63001 * 179.97438 * 14 12 2 16 16 C 1.36970 * 114.73624 * 179.97438 * 15 14 12 17 17 C 1.36983 * 113.48674 * 0.02562 * 16 15 14 18 18 C 1.41456 * 125.31282 * 180.02562 * 17 16 15 19 19 O 1.21725 * 120.00218 * 359.97438 * 18 17 16 20 20 O 1.34992 * 120.00251 * 179.97438 * 18 17 16 21 21 S 1.70615 * 124.62643 * 359.70078 * 14 12 2 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 27 27 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 28 28 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 29 29 H 1.08000 * 122.63410 * 359.97438 * 15 14 12 30 30 H 1.07997 * 123.25724 * 179.97438 * 16 15 14 31 31 H 0.96699 * 114.00416 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.8145 -0.0178 2.1076 15 6 3.3178 -0.5653 3.2465 16 6 4.0816 0.2843 4.0020 17 6 4.1966 1.5390 3.4644 18 6 4.9254 2.6091 4.0343 19 8 5.5149 2.4513 5.0875 20 8 4.9671 3.8053 3.4102 21 16 3.3034 1.6094 1.9521 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.4158 -2.7377 0.9716 27 1 1.6239 -2.2853 2.5001 28 1 0.6905 -2.3002 0.9845 29 1 3.1299 -1.5897 3.5327 30 1 4.5475 -0.0066 4.9319 31 1 5.4887 4.4737 3.8752 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070609628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -60.139031 kcal Electronic energy + Delta-G solvation = -16497.774702 eV Core-core repulsion = 13677.776021 eV Total energy + Delta-G solvation = -2819.998681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76954 -38.23601 -36.14806 -35.40870 -33.09693 -30.06000 -28.55695 -26.73898 -25.47577 -23.83435 -21.74544 -20.55316 -18.55207 -18.24815 -17.16830 -16.64881 -15.63533 -15.29274 -15.22159 -14.70989 -14.11056 -13.81240 -13.36390 -12.84974 -12.64670 -12.27733 -11.94605 -11.72519 -11.52156 -11.31106 -11.21115 -11.04422 -10.82857 -10.62108 -10.40954 -10.31911 -10.08180 -9.65716 -9.07197 -8.68816 -8.11058 -6.73674 -6.28961 -4.42313 1.05677 1.84221 2.48797 2.76949 3.13404 3.22496 3.25328 3.54652 3.72914 3.73454 4.22050 4.99580 5.48818 5.57448 5.79799 5.86574 5.97626 6.13869 6.20881 6.40606 6.58012 6.59982 6.67399 6.72894 6.78617 6.99791 7.35788 7.53515 7.67494 7.88996 8.02690 8.25388 8.62210 9.26295 10.72939 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.005998 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.734913 B = 4666.877735 C = 5073.907937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.259 3.741 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.551 5.551 13 C 0.096 3.904 14 C 0.154 3.846 15 C -0.316 4.316 16 C 0.037 3.963 17 C -0.384 4.384 18 C 0.564 3.436 19 O -0.545 6.545 20 O -0.513 6.513 21 S 0.228 5.772 22 H 0.017 0.983 23 H 0.036 0.964 24 H 0.099 0.901 25 H 0.267 0.733 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -0.194 7.337 7.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.159 3.841 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.254 5.254 13 C -0.048 4.048 14 C -0.080 4.080 15 C -0.346 4.346 16 C 0.004 3.996 17 C -0.502 4.502 18 C 0.414 3.586 19 O -0.440 6.440 20 O -0.322 6.322 21 S 0.485 5.515 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.118 0.882 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.194 0.553 6.016 6.158 hybrid contribution 0.828 -1.294 0.434 1.596 sum 2.022 -0.741 6.450 6.800 Atomic orbital electron populations 1.22150 0.97224 1.00200 1.01438 1.19247 0.91924 0.92720 0.80232 0.93106 1.21295 1.32593 1.13645 0.89714 0.91705 1.24899 0.94550 0.94886 0.99171 1.69852 1.35747 1.22355 1.24286 0.86359 0.78727 0.79667 0.82259 1.19667 1.20724 1.20629 1.47049 1.46610 1.10988 1.20801 1.21630 1.01439 0.81560 1.00216 1.22699 0.93662 0.98674 0.92976 1.19656 1.13371 1.02919 0.98627 1.20195 0.92110 0.89753 0.97584 1.21697 1.22453 0.98617 1.07454 1.18006 0.77615 0.81331 0.81672 1.90887 1.45868 1.83636 1.23602 1.85105 1.70339 1.22931 1.53846 1.83602 1.46373 1.02865 1.18704 0.96415 0.94455 0.88226 0.92301 0.92837 0.92306 0.90446 0.84585 0.84146 0.74190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.26 5.84 2.66 -69.08 -0.18 5.66 16 3 H 0.05 1.24 6.31 -51.93 -0.33 0.91 16 4 C -0.53 -13.22 8.37 -34.44 -0.29 -13.51 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -22.95 11.32 55.43 0.63 -22.32 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.55 -10.78 2.85 -175.92 -0.50 -11.28 16 13 C 0.10 1.56 9.59 59.85 0.57 2.14 16 14 C 0.15 2.89 6.85 -15.35 -0.11 2.79 16 15 C -0.32 -5.28 9.40 -40.83 -0.38 -5.66 16 16 C 0.04 0.61 9.91 -40.50 -0.40 0.21 16 17 C -0.38 -6.82 6.25 -38.81 -0.24 -7.06 16 18 C 0.56 9.68 8.08 31.96 0.26 9.94 16 19 O -0.55 -10.28 17.45 -19.44 -0.34 -10.62 16 20 O -0.51 -7.30 13.29 -41.29 -0.55 -7.85 16 21 S 0.23 4.21 20.93 -107.50 -2.25 1.96 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.04 0.75 6.66 -51.93 -0.35 0.41 16 24 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.80 6.59 -51.92 -0.34 0.46 16 28 H 0.08 1.24 6.43 -51.93 -0.33 0.90 16 29 H 0.14 1.99 6.79 -52.49 -0.36 1.64 16 30 H 0.14 2.09 8.01 -52.49 -0.42 1.67 16 31 H 0.40 3.65 8.98 45.56 0.41 4.06 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -28.27 280.14 -6.76 -35.03 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -2.41 Total: 2.91 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.53 Total: -6.80 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.13 Total: -33.61 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.89 Total: -18.46 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.25 Total: 1.96 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.27 -6.76 -35.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.107 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds