Wall clock time and date at job start Mon Mar 30 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47062 * 299.99417 * 3 2 1 6 6 H 1.48495 * 109.47104 * 59.99986 * 3 2 1 7 7 C 1.39934 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.41792 * 120.00098 * 0.02562 * 7 2 1 10 10 N 1.31928 * 126.42792 * 0.02562 * 9 7 2 11 11 O 1.21271 * 110.14465 * 179.97438 * 10 9 7 12 12 C 1.34390 * 110.09244 * 359.97438 * 11 10 9 13 13 C 1.47471 * 126.44528 * 180.02562 * 12 11 10 14 14 C 1.39243 * 120.33489 * 180.02562 * 13 12 11 15 15 C 1.38345 * 120.20804 * 180.02562 * 14 13 12 16 16 C 1.37999 * 120.86292 * 359.97438 * 15 14 13 17 17 C 1.39039 * 120.25457 * 0.02562 * 16 15 14 18 18 N 1.37781 * 133.36315 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.07089 * 359.96827 * 18 17 16 20 20 C 1.36639 * 109.85149 * 179.97438 * 18 17 16 21 21 C 1.34486 * 109.88806 * 0.02562 * 20 18 17 22 22 C 1.40615 * 119.52208 * 0.02562 * 17 16 15 23 23 N 1.31899 * 107.10845 * 0.26229 * 12 11 10 24 24 H 0.97003 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.89807 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.56857 * 179.72143 * 15 14 13 27 27 H 1.08003 * 119.87480 * 179.97438 * 16 15 14 28 28 H 1.07997 * 125.05382 * 179.97438 * 20 18 17 29 29 H 1.07999 * 126.49833 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 0.0006 5 1 1.8830 2.3963 -1.2126 6 1 1.8830 2.3964 1.2125 7 6 2.0073 -1.2119 0.0005 8 1 3.0873 -1.2118 0.0010 9 6 1.2983 -2.4398 0.0005 10 7 -0.0127 -2.5875 -0.0004 11 8 -0.3003 -3.7656 -0.0006 12 6 0.8163 -4.5134 -0.0004 13 6 0.8841 -5.9866 -0.0010 14 6 2.1170 -6.6338 -0.0001 15 6 2.1775 -8.0160 -0.0013 16 6 1.0250 -8.7750 -0.0028 17 6 -0.2206 -8.1574 -0.0037 18 7 -1.5132 -8.6345 -0.0057 19 1 -1.7611 -9.5723 -0.0073 20 6 -2.3936 -7.5896 -0.0052 21 6 -1.7212 -6.4249 -0.0036 22 6 -0.2978 -6.7533 -0.0037 23 7 1.8402 -3.6819 0.0058 24 1 -0.4850 0.8401 -0.0004 25 1 3.0288 -6.0551 0.0006 26 1 3.1393 -8.5073 -0.0052 27 1 1.0909 -9.8531 -0.0041 28 1 -3.4693 -7.6848 -0.0069 29 1 -2.1519 -5.4345 -0.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073641379.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:55 Heat of formation + Delta-G solvation = 117.818236 kcal Electronic energy + Delta-G solvation = -17487.933559 eV Core-core repulsion = 14572.500484 eV Total energy + Delta-G solvation = -2915.433075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.14167 -40.98053 -36.78034 -34.38195 -33.17576 -32.16912 -30.02957 -29.07628 -28.17924 -26.45045 -23.49666 -22.11500 -21.18392 -20.96928 -20.23299 -18.29129 -16.67865 -16.08252 -16.04098 -15.58191 -15.26696 -14.59074 -14.29390 -14.03344 -13.62525 -12.95863 -12.79833 -12.50935 -11.61806 -11.52592 -11.34386 -11.29912 -11.09991 -10.76587 -10.36279 -10.29794 -10.06719 -9.87040 -9.10050 -9.03979 -8.23612 -8.07334 -7.22992 -6.58927 -4.59586 0.99250 1.78649 2.84239 3.02626 3.14528 3.14926 3.21130 3.21853 4.01662 4.03568 4.23964 4.32877 4.91397 4.96775 5.28156 5.33049 5.37878 5.46868 5.70307 5.77251 5.89247 6.15090 6.35642 6.58839 6.62044 6.77341 6.79912 6.95103 7.11390 7.28112 7.30449 7.62236 7.77659 8.34777 8.55192 8.89161 10.34355 10.46442 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.042037 B = 0.005177 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.924564 B = 5406.821024 C = 6062.901504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.093 0.907 9 C 0.290 3.710 10 N -0.419 5.419 11 O 0.035 5.965 12 C 0.153 3.847 13 C 0.055 3.945 14 C -0.106 4.106 15 C -0.099 4.099 16 C -0.129 4.129 17 C 0.093 3.907 18 N -0.599 5.599 19 H 0.413 0.587 20 C 0.040 3.960 21 C -0.186 4.186 22 C -0.089 4.089 23 N -0.506 5.506 24 H 0.277 0.723 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.170 0.830 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -15.639 -0.027 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.151 4.151 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.475 4.475 8 H 0.111 0.889 9 C 0.038 3.962 10 N -0.144 5.144 11 O -0.010 6.010 12 C -0.065 4.065 13 C 0.052 3.948 14 C -0.128 4.128 15 C -0.118 4.118 16 C -0.151 4.151 17 C -0.014 4.014 18 N -0.203 5.203 19 H 0.249 0.751 20 C -0.085 4.085 21 C -0.211 4.211 22 C -0.095 4.095 23 N -0.247 5.247 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.187 0.813 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.667 -14.890 -0.021 15.127 hybrid contribution 0.114 0.292 -0.002 0.314 sum -2.552 -14.598 -0.023 14.819 Atomic orbital electron populations 1.69891 1.07141 1.28551 1.34714 1.25840 0.94986 1.01115 0.93192 0.86007 0.80497 0.80364 0.78329 1.18370 1.19949 1.19955 1.18454 0.94237 0.86109 1.48708 0.88939 1.22248 0.86047 0.91663 0.96234 1.75575 1.16166 0.90539 1.32087 1.85340 1.34070 1.13649 1.67915 1.25785 0.83868 0.94245 1.02634 1.16781 0.92275 0.85027 1.00672 1.21025 0.96797 0.94040 1.00913 1.20673 0.97394 0.93139 1.00606 1.20008 0.89306 0.99118 1.06650 1.18069 0.85618 0.92777 1.04938 1.41668 1.03941 1.08413 1.66291 0.75095 1.21816 0.95334 0.86387 1.04980 1.21921 0.90895 0.98466 1.09788 1.19084 0.93207 0.91712 1.05508 1.72241 1.28688 1.00777 1.23015 0.91260 0.84480 0.85290 0.86376 0.81281 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.25 11.97 55.54 0.66 -21.59 15 2 C 0.07 1.90 5.49 -17.37 -0.10 1.81 15 3 Si 0.92 20.00 29.56 -169.99 -5.02 14.98 15 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.43 -12.69 9.52 -37.59 -0.36 -13.04 15 8 H 0.09 2.57 7.85 -52.48 -0.41 2.15 15 9 C 0.29 8.73 7.67 -157.70 -1.21 7.52 15 10 N -0.42 -12.61 10.46 30.31 0.32 -12.30 15 11 O 0.03 0.93 9.94 16.14 0.16 1.09 15 12 C 0.15 3.78 7.99 -13.90 -0.11 3.67 15 13 C 0.06 1.10 5.89 -104.76 -0.62 0.49 15 14 C -0.11 -1.81 9.69 -39.17 -0.38 -2.19 15 15 C -0.10 -1.30 9.99 -39.63 -0.40 -1.70 15 16 C -0.13 -1.59 10.06 -39.37 -0.40 -1.98 15 17 C 0.09 1.31 7.27 -84.00 -0.61 0.70 15 18 N -0.60 -6.51 6.07 -10.65 -0.06 -6.57 15 19 H 0.41 2.86 8.96 -40.82 -0.37 2.50 15 20 C 0.04 0.47 11.82 -16.74 -0.20 0.27 15 21 C -0.19 -2.97 10.47 -37.77 -0.40 -3.37 15 22 C -0.09 -1.57 6.18 -104.86 -0.65 -2.22 15 23 N -0.51 -13.84 11.28 -11.44 -0.13 -13.97 15 24 H 0.28 7.17 8.29 -40.82 -0.34 6.84 15 25 H 0.14 2.36 7.86 -52.48 -0.41 1.95 15 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.12 1.05 8.06 -52.48 -0.42 0.63 15 28 H 0.17 1.29 8.06 -52.49 -0.42 0.87 15 29 H 0.15 2.60 7.31 -52.49 -0.38 2.22 15 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -34.80 267.09 -7.44 -42.24 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -1.98 Total: 2.15 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -5.41 Total: -10.05 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.79 Total: -54.43 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 0.16 Total: 1.09 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.80 -7.44 -42.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641379.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.059 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds