Wall clock time and date at job start Mon Mar 30 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00309 * 2 1 4 4 H 1.48497 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47249 * 300.00738 * 3 2 1 6 6 H 1.48500 * 109.46776 * 60.00236 * 3 2 1 7 7 C 1.37881 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99729 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.24381 * 299.50106 * 9 7 2 11 11 N 1.46627 * 109.27081 * 58.99687 * 9 7 2 12 12 C 1.47165 * 110.24711 * 172.78536 * 11 9 7 13 13 C 1.52897 * 108.50488 * 288.73450 * 12 11 9 14 14 C 1.50729 * 109.96060 * 50.39464 * 13 12 11 15 15 C 1.38695 * 118.46768 * 163.22718 * 14 13 12 16 16 C 1.38032 * 120.41494 * 179.72492 * 15 14 13 17 17 C 1.38329 * 119.84691 * 359.76998 * 16 15 14 18 18 Cl 1.73600 * 120.09450 * 180.34607 * 17 16 15 19 19 C 1.38350 * 119.80838 * 0.59434 * 17 16 15 20 20 F 1.35104 * 119.83796 * 179.68366 * 19 17 16 21 21 C 1.37818 * 121.64939 * 343.09279 * 14 13 12 22 22 H 0.97006 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00656 * 49.36929 * 11 9 7 24 24 H 1.09006 * 109.62924 * 48.43429 * 12 11 9 25 25 H 1.08996 * 109.63520 * 169.02809 * 12 11 9 26 26 H 1.08995 * 109.39362 * 170.54294 * 13 12 11 27 27 H 1.09000 * 109.38839 * 290.34541 * 13 12 11 28 28 H 1.07993 * 119.79164 * 359.70269 * 15 14 13 29 29 H 1.08001 * 120.07268 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6328 -2.5570 0.8953 11 7 0.3911 -2.5614 -1.1866 12 6 -0.2237 -3.8937 -1.3006 13 6 0.8598 -4.8955 -1.7009 14 6 2.0509 -4.7575 -0.7876 15 6 2.9787 -5.7878 -0.7510 16 6 4.0874 -5.7010 0.0667 17 6 4.2778 -4.5779 0.8515 18 17 5.6745 -4.4581 1.8755 19 6 3.3493 -3.5527 0.8218 20 9 3.5314 -2.4583 1.5929 21 6 2.2337 -3.6406 -0.0012 22 1 -0.4850 0.8401 0.0004 23 1 0.9086 -2.3295 -2.0211 24 1 -0.6527 -4.1823 -0.3409 25 1 -1.0031 -3.8734 -2.0622 26 1 0.4622 -5.9076 -1.6266 27 1 1.1691 -4.7027 -2.7282 28 1 2.8327 -6.6635 -1.3658 29 1 4.8066 -6.5063 0.0905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075661934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:34 Heat of formation + Delta-G solvation = -23.525836 kcal Electronic energy + Delta-G solvation = -16942.922176 eV Core-core repulsion = 13999.007150 eV Total energy + Delta-G solvation = -2943.915025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.07281 -39.43758 -36.67380 -35.49380 -32.98143 -31.12823 -30.12275 -28.39940 -25.46193 -23.04717 -22.70731 -21.25213 -19.60689 -17.08455 -16.60307 -15.89026 -15.69294 -14.87564 -14.52696 -14.26535 -13.92129 -13.43182 -13.18541 -12.78108 -12.59322 -12.25474 -11.87892 -11.75573 -11.68306 -11.10476 -10.91472 -10.76453 -10.60448 -10.54629 -10.33303 -9.75177 -9.22778 -8.50564 -8.12285 -7.99636 -7.10851 -5.93142 -4.06833 1.39134 1.60318 2.35671 3.33052 3.41466 3.46992 3.85785 4.47233 4.67716 5.01450 5.12730 5.18745 5.37846 5.57961 5.63493 5.72598 5.82379 5.92652 6.19925 6.27728 6.41048 6.43000 6.47791 6.61760 6.84496 7.24042 7.27065 7.87593 8.03903 8.41573 8.76083 9.01948 9.61123 11.10990 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.010027 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.036477 B = 2791.732795 C = 4061.851782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.252 3.748 10 H 0.059 0.941 11 N -0.637 5.637 12 C 0.048 3.952 13 C -0.117 4.117 14 C -0.064 4.064 15 C -0.129 4.129 16 C -0.105 4.105 17 C -0.088 4.088 18 Cl -0.072 7.072 19 C 0.132 3.868 20 F -0.107 7.107 21 C -0.099 4.099 22 H 0.257 0.743 23 H 0.329 0.671 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -10.983 -1.640 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.144 3.856 10 H 0.076 0.924 11 N -0.264 5.264 12 C -0.082 4.082 13 C -0.156 4.156 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.116 4.116 18 Cl -0.043 7.043 19 C 0.111 3.889 20 F -0.085 7.085 21 C -0.103 4.103 22 H 0.067 0.933 23 H 0.147 0.853 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.904 -10.491 -1.202 11.258 hybrid contribution 1.547 0.412 -0.059 1.602 sum 5.450 -10.079 -1.261 11.528 Atomic orbital electron populations 1.70122 1.05623 1.25849 1.46559 1.24923 0.94649 0.98697 0.94027 0.86654 0.80452 0.84097 0.77524 1.19730 1.21036 1.20977 1.21049 0.92813 0.89126 1.54463 0.91815 1.18233 0.87113 0.88677 0.91562 0.92404 1.61311 1.37074 1.22032 1.05937 1.22145 0.95575 0.89646 1.00883 1.21302 0.94886 1.01527 0.97841 1.19654 0.96640 0.92914 0.97290 1.20969 0.94374 0.99286 1.00116 1.20631 0.98747 0.96286 0.96689 1.20995 0.91747 0.97819 1.00995 1.98335 1.40605 1.98245 1.67112 1.17377 0.94391 0.83541 0.93569 1.91592 1.94628 1.50396 1.71881 1.21516 0.96515 0.98301 0.93950 0.93339 0.85340 0.91735 0.91564 0.91111 0.90805 0.85583 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.93 12.71 55.43 0.70 -23.22 15 2 C 0.08 2.29 5.38 -17.82 -0.10 2.20 15 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.54 -14.36 7.19 -34.44 -0.25 -14.61 15 8 H 0.06 1.75 6.10 -52.49 -0.32 1.43 15 9 C 0.25 6.11 2.32 -70.20 -0.16 5.95 15 10 H 0.06 1.58 8.14 -51.93 -0.42 1.16 15 11 N -0.64 -14.23 5.88 -109.28 -0.64 -14.88 15 12 C 0.05 0.85 6.62 -3.73 -0.02 0.83 15 13 C -0.12 -1.75 5.82 -27.92 -0.16 -1.91 15 14 C -0.06 -1.12 5.77 -104.59 -0.60 -1.72 15 15 C -0.13 -1.90 9.65 -39.49 -0.38 -2.28 15 16 C -0.10 -1.57 9.83 -39.62 -0.39 -1.96 15 17 C -0.09 -1.56 6.32 -39.51 -0.25 -1.81 15 18 Cl -0.07 -1.16 28.61 -51.86 -1.48 -2.64 15 19 C 0.13 2.77 6.71 -39.29 -0.26 2.50 15 20 F -0.11 -2.48 13.86 2.25 0.03 -2.45 15 21 C -0.10 -2.09 5.47 -104.56 -0.57 -2.66 15 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 23 H 0.33 7.31 8.55 -39.29 -0.34 6.98 15 24 H 0.06 1.18 8.05 -51.93 -0.42 0.76 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 29 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 LS Contribution 262.70 15.07 3.96 3.96 Total: -1.00 -28.23 262.70 -8.35 -36.58 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.75 Total: 1.86 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.15 Total: -15.48 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.06 Total: -38.10 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.48 Total: -2.64 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.23 -8.35 -36.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075661934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.059 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds