Wall clock time and date at job start Mon Mar 30 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00309 * 2 1 4 4 H 1.48497 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47249 * 300.00738 * 3 2 1 6 6 H 1.48500 * 109.46776 * 60.00236 * 3 2 1 7 7 C 1.37881 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99729 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.24381 * 299.50106 * 9 7 2 11 11 N 1.46627 * 109.27081 * 58.99687 * 9 7 2 12 12 C 1.47165 * 110.24711 * 172.78536 * 11 9 7 13 13 C 1.52897 * 108.50488 * 288.73450 * 12 11 9 14 14 C 1.50729 * 109.96060 * 50.39464 * 13 12 11 15 15 C 1.38695 * 118.46768 * 163.22718 * 14 13 12 16 16 C 1.38032 * 120.41494 * 179.72492 * 15 14 13 17 17 C 1.38329 * 119.84691 * 359.76998 * 16 15 14 18 18 Cl 1.73600 * 120.09450 * 180.34607 * 17 16 15 19 19 C 1.38350 * 119.80838 * 0.59434 * 17 16 15 20 20 F 1.35104 * 119.83796 * 179.68366 * 19 17 16 21 21 C 1.37818 * 121.64939 * 343.09279 * 14 13 12 22 22 H 0.97006 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00656 * 49.36929 * 11 9 7 24 24 H 1.09006 * 109.62924 * 48.43429 * 12 11 9 25 25 H 1.08996 * 109.63520 * 169.02809 * 12 11 9 26 26 H 1.08995 * 109.39362 * 170.54294 * 13 12 11 27 27 H 1.09000 * 109.38839 * 290.34541 * 13 12 11 28 28 H 1.07993 * 119.79164 * 359.70269 * 15 14 13 29 29 H 1.08001 * 120.07268 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6328 -2.5570 0.8953 11 7 0.3911 -2.5614 -1.1866 12 6 -0.2237 -3.8937 -1.3006 13 6 0.8598 -4.8955 -1.7009 14 6 2.0509 -4.7575 -0.7876 15 6 2.9787 -5.7878 -0.7510 16 6 4.0874 -5.7010 0.0667 17 6 4.2778 -4.5779 0.8515 18 17 5.6745 -4.4581 1.8755 19 6 3.3493 -3.5527 0.8218 20 9 3.5314 -2.4583 1.5929 21 6 2.2337 -3.6406 -0.0012 22 1 -0.4850 0.8401 0.0004 23 1 0.9086 -2.3295 -2.0211 24 1 -0.6527 -4.1823 -0.3409 25 1 -1.0031 -3.8734 -2.0622 26 1 0.4622 -5.9076 -1.6266 27 1 1.1691 -4.7027 -2.7282 28 1 2.8327 -6.6635 -1.3658 29 1 4.8066 -6.5063 0.0905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075661934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:33 Heat of formation + Delta-G solvation = -41.066895 kcal Electronic energy + Delta-G solvation = -16943.682813 eV Core-core repulsion = 13999.007150 eV Total energy + Delta-G solvation = -2944.675663 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.71056 -40.84574 -38.06386 -36.93134 -34.80327 -32.78642 -31.55250 -29.88205 -27.28327 -24.61919 -24.16007 -22.78040 -21.08476 -18.91873 -18.10303 -17.42367 -17.14492 -16.59331 -16.34793 -15.78290 -15.37220 -14.88646 -14.63285 -14.36895 -14.20488 -13.65406 -13.47630 -13.38739 -13.05762 -12.82657 -12.57966 -12.49609 -12.08489 -11.93573 -11.82271 -11.56668 -11.08485 -10.57618 -9.54243 -9.44771 -8.74769 -8.00977 -6.19215 0.04122 0.23915 1.03044 1.38859 1.41880 1.52568 2.43021 2.54095 3.20938 3.29671 3.78240 3.79958 3.96100 4.17832 4.25454 4.43035 4.48449 4.61292 4.95447 4.97704 5.05151 5.09682 5.16093 5.23784 5.31685 5.53274 5.75609 5.85321 6.13861 6.56895 7.02261 7.05375 7.50601 9.02601 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.010027 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.036477 B = 2791.732795 C = 4061.851782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.261 3.739 10 H 0.008 0.992 11 N -0.659 5.659 12 C 0.047 3.953 13 C -0.107 4.107 14 C -0.067 4.067 15 C -0.110 4.110 16 C -0.089 4.089 17 C -0.094 4.094 18 Cl -0.062 7.062 19 C 0.093 3.907 20 F -0.135 7.135 21 C -0.133 4.133 22 H 0.256 0.744 23 H 0.327 0.673 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.176 0.824 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -13.654 -3.237 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.152 3.848 10 H 0.025 0.975 11 N -0.286 5.286 12 C -0.083 4.083 13 C -0.145 4.145 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.121 4.121 18 Cl -0.033 7.033 19 C 0.073 3.927 20 F -0.114 7.114 21 C -0.136 4.136 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.194 0.806 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.874 -13.173 -2.800 14.322 hybrid contribution 1.276 1.112 0.451 1.752 sum 6.149 -12.061 -2.350 13.740 Atomic orbital electron populations 1.70229 1.06699 1.26328 1.48077 1.25570 0.95383 1.01472 0.94105 0.85781 0.78950 0.80816 0.77676 1.20124 1.20106 1.20850 1.21267 0.92332 0.90898 1.53502 0.93248 1.17703 0.87231 0.89335 0.90482 0.97466 1.61033 1.36890 1.25682 1.04961 1.22197 0.96818 0.88329 1.00975 1.21267 0.92809 1.02483 0.97933 1.20011 0.98088 0.92163 0.96463 1.21459 0.92618 0.99438 0.99267 1.21173 0.99250 0.95711 0.94609 1.21162 0.91503 0.97827 1.01618 1.98335 1.39739 1.98279 1.66977 1.17775 0.96121 0.84154 0.94696 1.91500 1.94941 1.52089 1.72829 1.21254 0.96593 0.99072 0.96713 0.93453 0.85576 0.93166 0.89521 0.87165 0.88960 0.80631 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.49 12.71 21.45 0.27 -51.22 15 2 C 0.04 2.18 5.38 84.66 0.46 2.63 15 3 Si 0.94 45.15 29.54 68.60 2.03 47.17 15 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 7 C -0.54 -30.42 7.19 25.60 0.18 -30.23 15 8 H 0.05 2.85 6.10 -2.91 -0.02 2.84 15 9 C 0.26 13.28 2.32 43.45 0.10 13.38 15 10 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 11 N -0.66 -30.11 5.88 -499.66 -2.94 -33.05 15 12 C 0.05 1.60 6.62 86.22 0.57 2.17 15 13 C -0.11 -2.81 5.82 29.82 0.17 -2.63 15 14 C -0.07 -2.14 5.77 -19.85 -0.11 -2.25 15 15 C -0.11 -2.67 9.65 22.33 0.22 -2.45 15 16 C -0.09 -2.28 9.83 22.24 0.22 -2.06 15 17 C -0.09 -3.17 6.32 22.32 0.14 -3.03 15 18 Cl -0.06 -1.92 28.61 -2.72 -0.08 -2.00 15 19 C 0.09 3.97 6.71 22.46 0.15 4.12 15 20 F -0.14 -6.63 13.86 44.97 0.62 -6.01 15 21 C -0.13 -5.65 5.47 -19.83 -0.11 -5.76 15 22 H 0.26 14.34 8.31 -92.70 -0.77 13.57 15 23 H 0.33 14.77 8.55 -89.70 -0.77 14.01 15 24 H 0.05 1.84 8.05 -2.38 -0.02 1.82 15 25 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.11 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.18 2.63 8.06 -2.91 -0.02 2.61 15 29 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -65.65 262.70 2.32 -63.33 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.42 Total: 7.89 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 1.99 Total: -26.12 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.66 Total: -84.26 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.62 Total: -6.01 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -65.65 2.32 -63.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075661934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.266 kcal (2) G-P(sol) polarization free energy of solvation -65.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds