Wall clock time and date at job start Mon Mar 30 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48500 * 109.47371 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47093 * 120.00199 * 3 2 1 7 7 C 1.37876 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.29879 * 60.41314 * 9 7 2 11 11 N 1.46635 * 109.13081 * 300.93604 * 9 7 2 12 12 C 1.47158 * 110.24734 * 187.22062 * 11 9 7 13 13 C 1.52893 * 108.51682 * 71.24316 * 12 11 9 14 14 C 1.50723 * 109.96261 * 309.61361 * 13 12 11 15 15 C 1.38820 * 118.46034 * 196.70339 * 14 13 12 16 16 Cl 1.73600 * 119.82130 * 0.46465 * 15 14 13 17 17 C 1.38106 * 120.35606 * 180.44609 * 15 14 13 18 18 C 1.38465 * 119.78892 * 359.97438 * 17 15 14 19 19 F 1.35105 * 120.08587 * 179.64562 * 18 17 15 20 20 C 1.38244 * 119.82816 * 359.91554 * 18 17 15 21 21 C 1.37826 * 121.66026 * 16.97996 * 14 13 12 22 22 H 0.96999 * 120.00058 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00275 * 63.80108 * 11 9 7 24 24 H 1.09006 * 109.63078 * 190.94560 * 12 11 9 25 25 H 1.08999 * 109.63151 * 311.33603 * 12 11 9 26 26 H 1.08995 * 109.39620 * 189.45706 * 13 12 11 27 27 H 1.08999 * 109.38748 * 69.75982 * 13 12 11 28 28 H 1.07999 * 120.10559 * 180.02562 * 17 15 14 29 29 H 1.08002 * 119.81044 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6315 -2.5573 -0.8943 11 7 0.3937 -2.5590 1.1885 12 6 -0.2223 -3.8903 1.3054 13 6 0.8608 -4.8931 1.7043 14 6 2.0500 -4.7576 0.7882 15 6 2.9779 -5.7894 0.7517 16 17 2.7428 -7.1973 1.7398 17 6 4.0869 -5.7022 -0.0667 18 6 4.2733 -4.5793 -0.8552 19 9 5.3598 -4.4845 -1.6527 20 6 3.3477 -3.5531 -0.8202 21 6 2.2334 -3.6411 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3098 -1.8361 1.1635 24 1 -0.9999 -3.8683 2.0691 25 1 -0.6571 -4.1780 0.3483 26 1 0.4618 -5.9048 1.6320 27 1 1.1715 -4.7008 2.7312 28 1 4.8061 -6.5075 -0.0922 29 1 3.4936 -2.6773 -1.4351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075688152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:40 Heat of formation + Delta-G solvation = -33.710986 kcal Electronic energy + Delta-G solvation = -16638.476310 eV Core-core repulsion = 13694.119623 eV Total energy + Delta-G solvation = -2944.356687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.53702 -39.45044 -36.48328 -35.49694 -33.22224 -31.28145 -30.20055 -28.31852 -25.66191 -23.28956 -22.58079 -21.38703 -19.11597 -17.04898 -16.76216 -16.06746 -15.31486 -15.20497 -14.97005 -14.37253 -14.14824 -13.70546 -13.26245 -12.99858 -12.68855 -12.40478 -12.19454 -11.47499 -11.37822 -11.21940 -10.99514 -10.72204 -10.63643 -10.60965 -10.31631 -9.79089 -9.40910 -8.69659 -8.32159 -8.01266 -7.07873 -6.24620 -4.27830 1.46664 1.59045 2.31285 3.25385 3.30050 3.33697 3.91803 4.31855 4.65398 5.01284 5.06767 5.22356 5.44204 5.54068 5.65980 5.86791 5.94390 6.10754 6.17077 6.36860 6.40599 6.50463 6.62076 6.64473 7.00342 7.08845 7.24613 7.73054 7.94105 8.41340 8.79234 8.89804 9.40828 10.86372 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.023161 B = 0.007903 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.663023 B = 3542.063572 C = 4531.067116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.245 3.755 10 H 0.020 0.980 11 N -0.675 5.675 12 C 0.046 3.954 13 C -0.070 4.070 14 C -0.079 4.079 15 C -0.016 4.016 16 Cl -0.076 7.076 17 C -0.167 4.167 18 C 0.094 3.906 19 F -0.142 7.142 20 C -0.134 4.134 21 C 0.004 3.996 22 H 0.267 0.733 23 H 0.369 0.631 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -9.602 0.959 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.137 3.863 10 H 0.038 0.962 11 N -0.313 5.313 12 C -0.084 4.084 13 C -0.108 4.108 14 C -0.081 4.081 15 C -0.042 4.042 16 Cl -0.047 7.047 17 C -0.187 4.187 18 C 0.075 3.925 19 F -0.121 7.121 20 C -0.153 4.153 21 C 0.003 3.997 22 H 0.077 0.923 23 H 0.193 0.807 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.153 0.847 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.966 -9.718 1.455 10.264 hybrid contribution 0.072 0.734 -0.714 1.027 sum 3.038 -8.984 0.741 9.513 Atomic orbital electron populations 1.69614 1.06089 1.27557 1.50449 1.24963 0.94943 0.99445 0.93744 0.86472 0.79485 0.82183 0.78817 1.20140 1.21202 1.19982 1.21064 0.93040 0.89027 1.51287 0.91628 1.18060 0.89290 0.89853 0.89066 0.96246 1.61095 1.25438 1.02332 1.42387 1.21922 0.95018 0.92761 0.98707 1.20533 0.93039 0.98925 0.98264 1.19605 0.96796 0.92488 0.99170 1.20509 0.96957 0.89673 0.97101 1.98322 1.96725 1.40270 1.69385 1.20623 0.99284 0.99062 0.99734 1.17393 0.85787 0.95838 0.93527 1.91464 1.52390 1.96457 1.71799 1.21381 0.93833 0.98462 1.01639 1.20149 0.94918 0.93823 0.90819 0.92271 0.80658 0.91857 0.96209 0.91256 0.90121 0.84730 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.64 11.45 55.43 0.63 -23.01 15 2 C 0.07 1.85 5.37 -17.82 -0.10 1.75 15 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.51 -13.00 7.99 -34.44 -0.28 -13.27 15 8 H 0.07 1.67 6.71 -52.49 -0.35 1.32 15 9 C 0.24 5.83 2.47 -70.20 -0.17 5.66 15 10 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 11 N -0.68 -15.39 6.42 -109.28 -0.70 -16.09 15 12 C 0.05 0.87 6.58 -3.74 -0.02 0.84 15 13 C -0.07 -1.21 5.26 -27.93 -0.15 -1.36 15 14 C -0.08 -1.50 5.78 -104.55 -0.60 -2.10 15 15 C -0.02 -0.27 6.31 -39.41 -0.25 -0.51 15 16 Cl -0.08 -1.08 27.38 -51.86 -1.42 -2.50 15 17 C -0.17 -2.73 9.80 -39.55 -0.39 -3.12 15 18 C 0.09 1.67 7.30 -39.50 -0.29 1.38 15 19 F -0.14 -2.45 17.27 2.25 0.04 -2.41 15 20 C -0.13 -2.64 8.71 -39.41 -0.34 -2.99 15 21 C 0.00 0.08 5.47 -104.63 -0.57 -0.49 15 22 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 23 H 0.37 8.96 6.78 -39.29 -0.27 8.69 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 15 26 H 0.07 1.04 7.35 -51.93 -0.38 0.66 15 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.13 1.87 8.06 -52.49 -0.42 1.45 15 29 H 0.15 2.93 7.08 -52.49 -0.37 2.56 15 LS Contribution 261.19 15.07 3.94 3.94 Total: -1.00 -25.50 261.19 -8.31 -33.80 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.62 Total: 5.16 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.16 Total: -14.20 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.07 Total: -39.10 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.42 Total: -2.50 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.50 -8.31 -33.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075688152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.093 kcal (2) G-P(sol) polarization free energy of solvation -25.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds