Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48500 * 109.47371 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47093 * 120.00199 * 3 2 1 7 7 C 1.37876 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.29879 * 60.41314 * 9 7 2 11 11 N 1.46635 * 109.13081 * 300.93604 * 9 7 2 12 12 C 1.47158 * 110.24734 * 187.22062 * 11 9 7 13 13 C 1.52893 * 108.51682 * 71.24316 * 12 11 9 14 14 C 1.50723 * 109.96261 * 309.61361 * 13 12 11 15 15 C 1.38820 * 118.46034 * 196.70339 * 14 13 12 16 16 Cl 1.73600 * 119.82130 * 0.46465 * 15 14 13 17 17 C 1.38106 * 120.35606 * 180.44609 * 15 14 13 18 18 C 1.38465 * 119.78892 * 359.97438 * 17 15 14 19 19 F 1.35105 * 120.08587 * 179.64562 * 18 17 15 20 20 C 1.38244 * 119.82816 * 359.91554 * 18 17 15 21 21 C 1.37826 * 121.66026 * 16.97996 * 14 13 12 22 22 H 0.96999 * 120.00058 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00275 * 63.80108 * 11 9 7 24 24 H 1.09006 * 109.63078 * 190.94560 * 12 11 9 25 25 H 1.08999 * 109.63151 * 311.33603 * 12 11 9 26 26 H 1.08995 * 109.39620 * 189.45706 * 13 12 11 27 27 H 1.08999 * 109.38748 * 69.75982 * 13 12 11 28 28 H 1.07999 * 120.10559 * 180.02562 * 17 15 14 29 29 H 1.08002 * 119.81044 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6315 -2.5573 -0.8943 11 7 0.3937 -2.5590 1.1885 12 6 -0.2223 -3.8903 1.3054 13 6 0.8608 -4.8931 1.7043 14 6 2.0500 -4.7576 0.7882 15 6 2.9779 -5.7894 0.7517 16 17 2.7428 -7.1973 1.7398 17 6 4.0869 -5.7022 -0.0667 18 6 4.2733 -4.5793 -0.8552 19 9 5.3598 -4.4845 -1.6527 20 6 3.3477 -3.5531 -0.8202 21 6 2.2334 -3.6411 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3098 -1.8361 1.1635 24 1 -0.9999 -3.8683 2.0691 25 1 -0.6571 -4.1780 0.3483 26 1 0.4618 -5.9048 1.6320 27 1 1.1715 -4.7008 2.7312 28 1 4.8061 -6.5075 -0.0922 29 1 3.4936 -2.6773 -1.4351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075688152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -47.717405 kcal Electronic energy + Delta-G solvation = -16639.083674 eV Core-core repulsion = 13694.119623 eV Total energy + Delta-G solvation = -2944.964051 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.93114 -40.93925 -37.84860 -36.98457 -34.97830 -32.95648 -31.71615 -29.87341 -27.45919 -24.89314 -24.06809 -22.98580 -20.62253 -18.72393 -18.34930 -17.67403 -16.81238 -16.71666 -16.53148 -16.01339 -15.61916 -15.18234 -14.90404 -14.52598 -14.24926 -13.92912 -13.82930 -12.94604 -12.88475 -12.84067 -12.67425 -12.37583 -12.15006 -12.03351 -11.86689 -11.40370 -11.20904 -10.65372 -9.77987 -9.44297 -8.86594 -8.20265 -6.29795 0.02982 0.14926 1.00637 1.44520 1.46235 1.53216 2.38056 2.49967 3.06516 3.25032 3.68947 3.77275 3.93388 4.04392 4.15762 4.44269 4.53062 4.62698 4.70463 4.88742 4.94068 5.01438 5.07399 5.20618 5.26799 5.49592 5.72960 5.76649 6.11372 6.55240 6.89277 7.03810 7.41553 8.89344 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.023161 B = 0.007903 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.663023 B = 3542.063572 C = 4531.067116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.029 3.971 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.249 3.751 10 H -0.017 1.017 11 N -0.686 5.686 12 C 0.044 3.956 13 C -0.065 4.065 14 C -0.087 4.087 15 C -0.014 4.014 16 Cl -0.044 7.044 17 C -0.150 4.150 18 C 0.095 3.905 19 F -0.138 7.138 20 C -0.147 4.147 21 C -0.024 4.024 22 H 0.268 0.732 23 H 0.356 0.644 24 H 0.086 0.914 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -11.263 1.825 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.141 3.859 10 H 0.000 1.000 11 N -0.321 5.321 12 C -0.086 4.086 13 C -0.102 4.102 14 C -0.088 4.088 15 C -0.041 4.041 16 Cl -0.015 7.015 17 C -0.170 4.170 18 C 0.076 3.924 19 F -0.117 7.117 20 C -0.166 4.166 21 C -0.025 4.025 22 H 0.077 0.923 23 H 0.178 0.822 24 H 0.104 0.896 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.185 0.815 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.909 -11.401 2.321 12.274 hybrid contribution -0.212 1.135 -0.972 1.509 sum 3.697 -10.266 1.350 10.995 Atomic orbital electron populations 1.69718 1.07029 1.28062 1.51007 1.25648 0.95710 1.02192 0.93597 0.85585 0.78362 0.78841 0.78667 1.19699 1.20768 1.20055 1.21333 0.93018 0.90459 1.51249 0.92234 1.17815 0.89512 0.90604 0.88008 1.00021 1.61041 1.25481 1.03970 1.41631 1.22060 0.96148 0.91099 0.99250 1.20558 0.91985 0.99702 0.97955 1.19756 0.97850 0.92301 0.98882 1.20514 0.96301 0.90136 0.97119 1.98337 1.96597 1.38167 1.68390 1.20935 0.99269 0.98857 0.97907 1.17340 0.85439 0.95825 0.93831 1.91475 1.52004 1.96461 1.71740 1.21290 0.94512 0.99001 1.01824 1.19926 0.95240 0.94229 0.93121 0.92297 0.82183 0.89573 0.96734 0.88539 0.89640 0.81515 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.66 11.45 21.45 0.25 -49.41 15 2 C 0.03 1.51 5.37 84.65 0.45 1.96 15 3 Si 0.96 42.32 29.54 68.60 2.03 44.35 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 7 C -0.52 -27.73 7.99 25.60 0.20 -27.53 15 8 H 0.06 3.14 6.71 -2.91 -0.02 3.12 15 9 C 0.25 12.29 2.47 43.45 0.11 12.40 15 10 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 15 11 N -0.69 -31.88 6.42 -499.66 -3.21 -35.09 15 12 C 0.04 1.63 6.58 86.22 0.57 2.20 15 13 C -0.06 -2.10 5.26 29.82 0.16 -1.95 15 14 C -0.09 -3.15 5.78 -19.82 -0.11 -3.26 15 15 C -0.01 -0.43 6.31 22.38 0.14 -0.29 15 16 Cl -0.04 -1.09 27.38 -2.72 -0.07 -1.16 15 17 C -0.15 -4.46 9.80 22.29 0.22 -4.24 15 18 C 0.10 3.25 7.30 22.33 0.16 3.41 15 19 F -0.14 -4.52 17.27 44.97 0.78 -3.75 15 20 C -0.15 -5.87 8.71 22.38 0.19 -5.68 15 21 C -0.02 -1.03 5.47 -19.87 -0.11 -1.14 15 22 H 0.27 13.81 8.31 -92.71 -0.77 13.04 15 23 H 0.36 17.82 6.78 -89.70 -0.61 17.21 15 24 H 0.09 2.74 8.14 -2.38 -0.02 2.72 15 25 H 0.01 0.55 8.05 -2.39 -0.02 0.53 15 26 H 0.10 2.59 7.35 -2.39 -0.02 2.58 15 27 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 28 H 0.17 3.87 8.06 -2.91 -0.02 3.84 15 29 H 0.13 5.56 7.08 -2.91 -0.02 5.54 15 Total: -1.00 -55.01 261.19 2.33 -52.67 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.58 Total: 16.49 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 1.99 Total: -24.10 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.96 Total: -84.50 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Total: -55.01 2.33 -52.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075688152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.956 kcal (2) G-P(sol) polarization free energy of solvation -55.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds