Wall clock time and date at job start Mon Mar 30 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.26825 * 299.50088 * 9 7 2 11 11 N 1.46625 * 109.27600 * 58.98720 * 9 7 2 12 12 C 1.47156 * 110.25732 * 172.79966 * 11 9 7 13 13 C 1.52891 * 108.50250 * 288.74851 * 12 11 9 14 14 C 1.50715 * 109.95992 * 50.39771 * 13 12 11 15 15 C 1.38864 * 118.47918 * 163.30678 * 14 13 12 16 16 F 1.35100 * 119.85874 * 359.58159 * 15 14 13 17 17 C 1.38370 * 120.28543 * 179.60316 * 15 14 13 18 18 Cl 1.73603 * 120.11191 * 179.97438 * 17 15 14 19 19 C 1.38322 * 119.77234 * 359.97438 * 17 15 14 20 20 C 1.38007 * 119.88553 * 0.08347 * 19 17 15 21 21 C 1.37819 * 121.66943 * 343.04285 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.00906 * 110.99667 * 296.22094 * 11 9 7 24 24 H 1.09002 * 109.63247 * 169.04164 * 12 11 9 25 25 H 1.08999 * 109.79239 * 48.55155 * 12 11 9 26 26 H 1.08998 * 109.38990 * 290.24293 * 13 12 11 27 27 H 1.09005 * 109.30806 * 170.49236 * 13 12 11 28 28 H 1.08003 * 120.05388 * 180.02562 * 19 17 15 29 29 H 1.08006 * 119.77536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8716 -0.6868 -0.8950 11 7 3.9951 -0.4818 1.1869 12 6 5.4561 -0.6152 1.3012 13 6 5.7821 -2.0548 1.6999 14 6 5.0677 -3.0163 0.7851 15 6 5.4956 -4.3369 0.7480 16 9 6.5358 -4.7287 1.5158 17 6 4.8613 -5.2531 -0.0722 18 17 5.4003 -6.9028 -0.1156 19 6 3.7963 -4.8501 -0.8576 20 6 3.3729 -3.5371 -0.8207 21 6 4.0086 -2.6160 -0.0007 22 1 -0.4850 0.8401 0.0004 23 1 3.7215 0.4892 1.1623 24 1 5.8278 0.0691 2.0639 25 1 5.9238 -0.3855 0.3438 26 1 5.4618 -2.2271 2.7274 27 1 6.8577 -2.2150 1.6244 28 1 3.2977 -5.5615 -1.4992 29 1 2.5414 -3.2243 -1.4350 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075708450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:51 Heat of formation + Delta-G solvation = -20.905538 kcal Electronic energy + Delta-G solvation = -16725.134403 eV Core-core repulsion = 13781.333002 eV Total energy + Delta-G solvation = -2943.801401 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.65692 -39.52960 -36.82286 -35.67749 -33.29204 -31.53848 -30.45399 -28.74754 -25.83139 -23.38585 -22.93471 -21.15822 -19.39574 -17.17517 -17.02639 -16.52520 -15.75552 -15.46543 -15.34624 -14.42260 -14.03556 -13.76725 -13.49826 -12.88434 -12.79219 -12.47664 -12.37261 -12.05785 -11.85029 -11.48524 -11.06681 -10.92776 -10.64206 -10.60866 -10.25458 -9.85866 -9.52106 -8.80690 -8.33039 -8.17972 -7.62089 -6.27507 -4.30116 1.40337 1.48305 2.24607 3.09940 3.10216 3.20589 3.85748 4.17661 4.39864 4.72528 4.88079 5.16744 5.28280 5.37484 5.46789 5.64798 5.74947 5.79954 6.05177 6.10973 6.27501 6.28302 6.42673 6.52791 6.59813 6.85534 7.09050 7.38356 7.87117 8.02175 8.29289 8.74935 9.31105 10.84584 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.032859 B = 0.007121 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.924762 B = 3931.363784 C = 4633.044439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.871 3.129 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.288 1.288 7 C -0.503 4.503 8 H 0.087 0.913 9 C 0.210 3.790 10 H 0.021 0.979 11 N -0.676 5.676 12 C 0.044 3.956 13 C -0.066 4.066 14 C -0.104 4.104 15 C 0.096 3.904 16 F -0.135 7.135 17 C -0.086 4.086 18 Cl -0.072 7.072 19 C -0.095 4.095 20 C -0.096 4.096 21 C 0.002 3.998 22 H 0.268 0.732 23 H 0.326 0.674 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -5.627 -0.631 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.215 1.215 7 C -0.542 4.542 8 H 0.105 0.895 9 C 0.103 3.897 10 H 0.038 0.962 11 N -0.314 5.314 12 C -0.085 4.085 13 C -0.104 4.104 14 C -0.106 4.106 15 C 0.076 3.924 16 F -0.114 7.114 17 C -0.113 4.113 18 Cl -0.043 7.043 19 C -0.114 4.114 20 C -0.115 4.115 21 C 0.001 3.999 22 H 0.078 0.922 23 H 0.149 0.851 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.167 -6.174 -0.172 11.896 hybrid contribution 0.866 1.225 -0.422 1.559 sum 11.034 -4.949 -0.594 12.107 Atomic orbital electron populations 1.69849 1.06063 1.27276 1.49104 1.24950 0.94750 0.98748 0.93842 0.87068 0.79907 0.84384 0.78585 1.19468 1.19687 1.21456 1.20939 0.86699 0.95227 1.51308 0.89468 1.18619 0.96617 0.86473 0.87975 0.96190 1.61505 1.08506 1.16886 1.44477 1.21979 0.91226 0.95929 0.99417 1.20386 0.98315 0.93103 0.98582 1.19607 0.98445 0.91872 1.00653 1.17283 0.88417 0.92396 0.94302 1.91455 1.55221 1.91302 1.73376 1.20761 1.01075 0.85562 1.03914 1.98335 1.89804 1.18216 1.97964 1.20882 0.94952 0.96980 0.98599 1.21372 0.99752 0.91121 0.99249 1.19890 0.90706 0.97509 0.91809 0.92189 0.85107 0.91124 0.95387 0.89744 0.90947 0.84540 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.96 55.43 0.77 -24.55 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.87 19.86 24.56 -169.99 -4.17 15.68 15 4 H -0.27 -5.94 7.01 56.52 0.40 -5.55 15 5 H -0.27 -5.89 6.55 56.52 0.37 -5.52 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.50 -13.08 8.57 -34.44 -0.30 -13.38 15 8 H 0.09 2.42 6.95 -52.49 -0.36 2.06 15 9 C 0.21 4.71 2.00 -70.20 -0.14 4.57 15 10 H 0.02 0.47 7.22 -51.93 -0.38 0.10 15 11 N -0.68 -14.46 6.38 -109.29 -0.70 -15.15 15 12 C 0.04 0.76 6.58 -3.74 -0.02 0.74 15 13 C -0.07 -1.09 5.60 -27.93 -0.16 -1.25 15 14 C -0.10 -1.93 5.78 -104.54 -0.60 -2.53 15 15 C 0.10 1.67 7.21 -39.30 -0.28 1.39 15 16 F -0.13 -2.27 16.13 2.25 0.04 -2.23 15 17 C -0.09 -1.41 6.32 -39.50 -0.25 -1.66 15 18 Cl -0.07 -1.04 28.62 -51.86 -1.48 -2.52 15 19 C -0.10 -1.52 9.83 -39.63 -0.39 -1.91 15 20 C -0.10 -1.76 8.72 -39.48 -0.34 -2.10 15 21 C 0.00 0.03 5.47 -104.62 -0.57 -0.54 15 22 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 23 H 0.33 7.04 3.96 -39.29 -0.16 6.88 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.03 0.47 8.05 -51.93 -0.42 0.05 15 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.07 1.03 7.94 -51.93 -0.41 0.62 15 28 H 0.14 1.80 8.06 -52.48 -0.42 1.38 15 29 H 0.15 2.74 7.07 -52.48 -0.37 2.37 15 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -27.51 255.72 -7.39 -34.89 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.54 Total: 4.62 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -3.16 Total: -14.59 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.08 Total: -39.71 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.68 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.52 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.51 -7.39 -34.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075708450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.986 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds