Wall clock time and date at job start Mon Mar 30 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.26825 * 299.50088 * 9 7 2 11 11 N 1.46625 * 109.27600 * 58.98720 * 9 7 2 12 12 C 1.47156 * 110.25732 * 172.79966 * 11 9 7 13 13 C 1.52891 * 108.50250 * 288.74851 * 12 11 9 14 14 C 1.50715 * 109.95992 * 50.39771 * 13 12 11 15 15 C 1.38864 * 118.47918 * 163.30678 * 14 13 12 16 16 F 1.35100 * 119.85874 * 359.58159 * 15 14 13 17 17 C 1.38370 * 120.28543 * 179.60316 * 15 14 13 18 18 Cl 1.73603 * 120.11191 * 179.97438 * 17 15 14 19 19 C 1.38322 * 119.77234 * 359.97438 * 17 15 14 20 20 C 1.38007 * 119.88553 * 0.08347 * 19 17 15 21 21 C 1.37819 * 121.66943 * 343.04285 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.00906 * 110.99667 * 296.22094 * 11 9 7 24 24 H 1.09002 * 109.63247 * 169.04164 * 12 11 9 25 25 H 1.08999 * 109.79239 * 48.55155 * 12 11 9 26 26 H 1.08998 * 109.38990 * 290.24293 * 13 12 11 27 27 H 1.09005 * 109.30806 * 170.49236 * 13 12 11 28 28 H 1.08003 * 120.05388 * 180.02562 * 19 17 15 29 29 H 1.08006 * 119.77536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8716 -0.6868 -0.8950 11 7 3.9951 -0.4818 1.1869 12 6 5.4561 -0.6152 1.3012 13 6 5.7821 -2.0548 1.6999 14 6 5.0677 -3.0163 0.7851 15 6 5.4956 -4.3369 0.7480 16 9 6.5358 -4.7287 1.5158 17 6 4.8613 -5.2531 -0.0722 18 17 5.4003 -6.9028 -0.1156 19 6 3.7963 -4.8501 -0.8576 20 6 3.3729 -3.5371 -0.8207 21 6 4.0086 -2.6160 -0.0007 22 1 -0.4850 0.8401 0.0004 23 1 3.7215 0.4892 1.1623 24 1 5.8278 0.0691 2.0639 25 1 5.9238 -0.3855 0.3438 26 1 5.4618 -2.2271 2.7274 27 1 6.8577 -2.2150 1.6244 28 1 3.2977 -5.5615 -1.4992 29 1 2.5414 -3.2243 -1.4350 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075708450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:51 Heat of formation + Delta-G solvation = -38.022203 kcal Electronic energy + Delta-G solvation = -16725.876637 eV Core-core repulsion = 13781.333002 eV Total energy + Delta-G solvation = -2944.543635 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.99230 -40.96858 -38.17817 -37.06091 -35.05224 -33.24633 -31.89992 -30.18758 -27.58302 -24.91252 -24.37800 -22.70577 -20.81424 -18.95883 -18.59565 -17.95934 -17.12027 -16.96039 -16.82646 -15.93959 -15.70027 -15.21970 -15.09679 -14.44276 -14.18773 -13.98648 -13.81220 -13.47797 -13.21709 -12.90713 -12.75969 -12.42304 -12.17535 -11.95962 -11.82281 -11.51134 -11.32974 -10.81780 -9.69066 -9.61463 -9.22133 -8.31759 -6.38525 -0.00272 0.11703 0.95830 1.26526 1.31427 1.38958 2.26618 2.44401 2.92334 3.05074 3.48173 3.56900 3.82632 4.01087 4.12167 4.29660 4.41688 4.48808 4.63123 4.76345 4.83101 4.93831 5.02269 5.08302 5.11811 5.28617 5.60599 5.77080 6.20205 6.29297 6.40009 6.69697 7.26633 8.83615 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.032859 B = 0.007121 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.924762 B = 3931.363784 C = 4633.044439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.255 1.255 5 H -0.254 1.254 6 H -0.291 1.291 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.216 3.784 10 H 0.015 0.985 11 N -0.693 5.693 12 C 0.042 3.958 13 C -0.066 4.066 14 C -0.109 4.109 15 C 0.093 3.907 16 F -0.130 7.130 17 C -0.084 4.084 18 Cl -0.050 7.050 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.028 4.028 22 H 0.268 0.732 23 H 0.322 0.678 24 H 0.100 0.900 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 -5.933 -0.279 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.180 1.180 5 H -0.178 1.178 6 H -0.218 1.218 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.108 3.892 10 H 0.032 0.968 11 N -0.330 5.330 12 C -0.087 4.087 13 C -0.103 4.103 14 C -0.111 4.111 15 C 0.072 3.928 16 F -0.108 7.108 17 C -0.111 4.111 18 Cl -0.021 7.021 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.028 4.028 22 H 0.078 0.922 23 H 0.145 0.855 24 H 0.118 0.882 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.183 0.817 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.590 -6.499 0.186 14.170 hybrid contribution 0.150 1.137 -0.536 1.266 sum 12.740 -5.362 -0.350 13.827 Atomic orbital electron populations 1.70001 1.07937 1.28193 1.51452 1.25757 0.95434 1.02574 0.93667 0.86057 0.79123 0.79587 0.79355 1.18036 1.17844 1.21799 1.21138 0.89065 0.93931 1.50218 0.92903 1.18364 0.94184 0.88385 0.88226 0.96839 1.61316 1.11572 1.16471 1.43633 1.22156 0.88442 0.97212 1.00855 1.20477 0.99712 0.92114 0.98020 1.19764 0.98035 0.92857 1.00416 1.17283 0.88649 0.92272 0.94549 1.91468 1.54919 1.91185 1.73242 1.20898 1.00598 0.86596 1.03054 1.98347 1.89522 1.16361 1.97842 1.21079 0.94531 0.96330 0.98346 1.21350 0.99661 0.92201 0.99276 1.19802 0.92436 0.96678 0.93913 0.92248 0.85529 0.88160 0.94645 0.89603 0.88214 0.81707 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 13.96 21.45 0.30 -55.17 15 2 C 0.03 1.37 5.47 84.66 0.46 1.84 15 3 Si 0.93 41.06 24.56 68.60 1.68 42.75 15 4 H -0.26 -10.60 7.01 99.48 0.70 -9.90 15 5 H -0.25 -10.32 6.55 99.48 0.65 -9.67 15 6 H -0.29 -12.84 7.11 99.48 0.71 -12.14 15 7 C -0.51 -27.05 8.57 25.60 0.22 -26.83 15 8 H 0.05 3.10 6.95 -2.91 -0.02 3.08 15 9 C 0.22 9.66 2.00 43.45 0.09 9.75 15 10 H 0.01 0.65 7.22 -2.38 -0.02 0.63 15 11 N -0.69 -28.58 6.38 -499.68 -3.19 -31.77 15 12 C 0.04 1.33 6.58 86.22 0.57 1.90 15 13 C -0.07 -1.99 5.60 29.82 0.17 -1.82 15 14 C -0.11 -3.84 5.78 -19.81 -0.11 -3.96 15 15 C 0.09 3.02 7.21 22.45 0.16 3.18 15 16 F -0.13 -3.98 16.13 44.97 0.73 -3.26 15 17 C -0.08 -2.57 6.32 22.32 0.14 -2.43 15 18 Cl -0.05 -1.30 28.62 -2.72 -0.08 -1.38 15 19 C -0.08 -2.56 9.83 22.24 0.22 -2.34 15 20 C -0.11 -3.88 8.72 22.34 0.19 -3.69 15 21 C -0.03 -1.10 5.47 -19.86 -0.11 -1.20 15 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 23 H 0.32 13.30 3.96 -89.69 -0.36 12.94 15 24 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.04 1.08 8.05 -2.39 -0.02 1.06 15 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.10 2.46 7.94 -2.38 -0.02 2.44 15 28 H 0.17 3.96 8.06 -2.91 -0.02 3.94 15 29 H 0.14 5.27 7.07 -2.91 -0.02 5.25 15 Total: -1.00 -59.76 255.72 2.21 -57.55 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.77 Total: 16.88 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 2.00 Total: -25.60 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.89 Total: -86.94 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.73 Total: -3.26 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.68 Total: 42.75 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -59.76 2.21 -57.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075708450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.529 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds