Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.29839 * 299.99194 * 9 7 2 11 11 N 1.46635 * 109.30507 * 59.58240 * 9 7 2 12 12 C 1.47166 * 110.22956 * 172.85136 * 11 9 7 13 13 C 1.52886 * 108.51028 * 288.71403 * 12 11 9 14 14 C 1.50719 * 109.96832 * 50.34074 * 13 12 11 15 15 C 1.38677 * 118.46719 * 163.29733 * 14 13 12 16 16 C 1.37328 * 120.58942 * 179.32022 * 15 14 13 17 17 Cl 1.73603 * 120.15118 * 180.15377 * 16 15 14 18 18 C 1.38340 * 119.76157 * 0.49905 * 16 15 14 19 19 C 1.38217 * 119.82626 * 359.71840 * 18 16 15 20 20 F 1.35092 * 119.83089 * 179.97438 * 19 18 16 21 21 C 1.37520 * 121.58081 * 343.06005 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.00898 * 110.99896 * 49.45016 * 11 9 7 24 24 H 1.09005 * 109.63265 * 48.42269 * 12 11 9 25 25 H 1.08999 * 109.62936 * 168.80843 * 12 11 9 26 26 H 1.09004 * 109.39182 * 170.49378 * 13 12 11 27 27 H 1.09000 * 109.38602 * 290.18794 * 13 12 11 28 28 H 1.07996 * 119.80385 * 359.80648 * 15 14 13 29 29 H 1.08000 * 120.08481 * 179.70525 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8721 -0.6792 -0.8905 11 7 3.9958 -0.4942 1.1941 12 6 5.4571 -0.6286 1.3051 13 6 5.7840 -2.0720 1.6887 14 6 5.0677 -3.0246 0.7662 15 6 5.4954 -4.3428 0.7153 16 6 4.8652 -5.2509 -0.0996 17 17 5.4075 -6.8993 -0.1514 18 6 3.8007 -4.8461 -0.8849 19 6 3.3742 -3.5321 -0.8403 20 9 2.3350 -3.1365 -1.6075 21 6 4.0094 -2.6156 -0.0110 22 1 -0.4850 0.8401 0.0004 23 1 3.5371 -0.8367 2.0250 24 1 5.9206 -0.3901 0.3478 25 1 5.8301 0.0506 2.0717 26 1 6.8594 -2.2325 1.6106 27 1 5.4661 -2.2545 2.7152 28 1 6.3263 -4.6615 1.3271 29 1 3.3043 -5.5548 -1.5312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075737272.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -25.070831 kcal Electronic energy + Delta-G solvation = -16884.603639 eV Core-core repulsion = 13940.621618 eV Total energy + Delta-G solvation = -2943.982021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.13605 -39.69165 -36.96011 -35.68339 -33.06094 -31.46547 -30.32350 -28.80618 -25.70381 -23.21529 -22.79960 -21.19558 -19.81615 -17.35165 -16.77506 -16.11536 -15.58517 -14.83901 -14.77293 -14.58221 -14.14653 -13.70637 -13.14350 -13.05338 -12.59150 -12.51882 -12.32695 -12.07226 -11.86058 -11.27828 -10.96096 -10.80835 -10.65167 -10.48642 -10.24334 -9.83626 -9.30528 -8.59425 -8.43576 -8.03369 -7.66721 -6.05512 -4.16476 1.36085 1.42307 2.16804 3.52941 3.55906 3.69252 3.75355 4.57748 4.71509 4.81783 4.93462 5.18919 5.32615 5.33459 5.43265 5.47824 5.61404 5.70002 5.95980 6.07823 6.21809 6.26728 6.36781 6.43506 6.62537 6.77752 7.15328 7.48713 7.91339 8.09689 8.51484 8.93567 9.54071 11.03248 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.007730 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.193499 B = 3621.411837 C = 4367.117352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.315 1.315 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.214 3.786 10 H 0.061 0.939 11 N -0.676 5.676 12 C 0.046 3.954 13 C -0.111 4.111 14 C -0.057 4.057 15 C -0.130 4.130 16 C -0.018 4.018 17 Cl -0.078 7.078 18 C -0.166 4.166 19 C 0.141 3.859 20 F -0.107 7.107 21 C -0.099 4.099 22 H 0.265 0.735 23 H 0.343 0.657 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 -7.485 1.688 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.759 3.241 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.245 1.245 7 C -0.563 4.563 8 H 0.100 0.900 9 C 0.107 3.893 10 H 0.079 0.921 11 N -0.306 5.306 12 C -0.084 4.084 13 C -0.150 4.150 14 C -0.058 4.058 15 C -0.149 4.149 16 C -0.044 4.044 17 Cl -0.049 7.049 18 C -0.186 4.186 19 C 0.121 3.879 20 F -0.085 7.085 21 C -0.102 4.102 22 H 0.074 0.926 23 H 0.163 0.837 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.147 0.853 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.048 -6.870 1.354 13.935 hybrid contribution 0.312 -0.401 0.163 0.534 sum 12.360 -7.271 1.518 14.420 Atomic orbital electron populations 1.69940 1.06747 1.27425 1.48796 1.24998 0.94637 0.99832 0.92564 0.86001 0.78729 0.81121 0.78291 1.20449 1.19610 1.24472 1.20934 0.86732 0.95347 1.53312 0.89999 1.18725 0.96743 0.83028 0.90852 0.92137 1.61401 1.02281 1.59478 1.07483 1.22109 0.91803 0.92949 1.01490 1.21182 0.99589 0.96186 0.98021 1.19318 0.95335 0.93587 0.97524 1.20656 1.01481 0.92317 1.00404 1.20078 0.97890 0.85582 1.00892 1.98341 1.89471 1.19235 1.97902 1.20898 0.99000 0.95664 1.03050 1.17409 0.86695 0.91367 0.92476 1.91629 1.53861 1.90913 1.72079 1.21049 0.94178 1.00113 0.94874 0.92569 0.83747 0.91335 0.90948 0.90624 0.90364 0.85340 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 15 2 C 0.08 2.38 5.47 -17.82 -0.10 2.29 15 3 Si 0.93 22.92 26.00 -169.99 -4.42 18.50 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 5 H -0.27 -6.53 6.54 56.52 0.37 -6.16 15 6 H -0.32 -7.96 7.11 56.52 0.40 -7.56 15 7 C -0.53 -14.17 7.75 -34.44 -0.27 -14.43 15 8 H 0.08 2.43 6.36 -52.49 -0.33 2.09 15 9 C 0.21 4.83 1.82 -70.20 -0.13 4.70 15 10 H 0.06 1.45 7.19 -51.93 -0.37 1.08 15 11 N -0.68 -13.61 4.13 -109.28 -0.45 -14.06 15 12 C 0.05 0.72 6.62 -3.74 -0.02 0.70 15 13 C -0.11 -1.52 5.82 -27.93 -0.16 -1.68 15 14 C -0.06 -0.93 5.76 -104.71 -0.60 -1.54 15 15 C -0.13 -1.91 9.39 -39.75 -0.37 -2.28 15 16 C -0.02 -0.27 6.29 -39.88 -0.25 -0.52 15 17 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.52 15 18 C -0.17 -2.79 9.81 -39.55 -0.39 -3.18 15 19 C 0.14 2.82 6.73 -39.32 -0.26 2.55 15 20 F -0.11 -2.43 14.30 2.25 0.03 -2.39 15 21 C -0.10 -1.97 5.46 -104.65 -0.57 -2.54 15 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 23 H 0.34 6.87 8.55 -39.29 -0.34 6.54 15 24 H 0.07 1.08 8.05 -51.93 -0.42 0.67 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 29 H 0.14 2.06 8.06 -52.49 -0.42 1.63 15 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -29.28 258.02 -7.55 -36.83 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.74 Total: 1.77 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -3.13 Total: -15.94 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.32 Total: -40.14 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.39 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.42 Total: 18.50 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.28 -7.55 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075737272.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.756 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds