Wall clock time and date at job start Mon Mar 30 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48500 * 109.46989 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47285 * 119.99691 * 3 2 1 6 6 H 1.48500 * 109.47066 * 239.99740 * 3 2 1 7 7 C 1.37877 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99448 * 16.75637 * 7 2 1 9 9 C 1.50695 * 120.00130 * 196.75336 * 7 2 1 10 10 H 1.08997 * 109.26881 * 305.16935 * 9 7 2 11 11 N 1.46624 * 109.27073 * 64.64302 * 9 7 2 12 12 C 1.47160 * 110.25873 * 172.80027 * 11 9 7 13 13 C 1.52900 * 108.50308 * 288.74799 * 12 11 9 14 14 C 1.50715 * 109.96065 * 50.39906 * 13 12 11 15 15 C 1.38740 * 118.46738 * 163.30653 * 14 13 12 16 16 Cl 1.73602 * 119.84723 * 359.57956 * 15 14 13 17 17 C 1.38372 * 120.30947 * 179.60457 * 15 14 13 18 18 F 1.35099 * 120.11968 * 179.97438 * 17 15 14 19 19 C 1.38447 * 119.75521 * 359.97438 * 17 15 14 20 20 C 1.37989 * 119.86076 * 0.07618 * 19 17 15 21 21 C 1.37848 * 121.66852 * 343.04396 * 14 13 12 22 22 H 0.97003 * 119.99853 * 174.68641 * 1 2 3 23 23 H 1.00900 * 111.00190 * 296.22957 * 11 9 7 24 24 H 1.09005 * 109.62891 * 169.04578 * 12 11 9 25 25 H 1.08995 * 109.79054 * 48.54755 * 12 11 9 26 26 H 1.09000 * 109.38651 * 290.25147 * 13 12 11 27 27 H 1.08994 * 109.30736 * 170.50534 * 13 12 11 28 28 H 1.08000 * 120.06785 * 180.02562 * 19 17 15 29 29 H 1.08001 * 119.78150 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4989 -2.1095 -0.2687 9 6 3.4636 -1.2215 0.3767 10 1 4.0108 -0.5208 -0.2538 11 7 3.6089 -0.8236 1.7804 12 6 5.0011 -1.0071 2.2205 13 6 5.2802 -2.5060 2.3354 14 6 4.8550 -3.2069 1.0706 15 6 5.3347 -4.4864 0.8304 16 17 6.4075 -5.2353 1.9714 17 6 4.9624 -5.1681 -0.3147 18 9 5.4321 -6.4137 -0.5451 19 6 4.1067 -4.5691 -1.2234 20 6 3.6314 -3.2961 -0.9835 21 6 4.0058 -2.6105 0.1632 22 1 -0.4850 -0.8365 -0.0778 23 1 3.3085 0.1296 1.9191 24 1 5.1438 -0.5326 3.1914 25 1 5.6799 -0.5629 1.4925 26 1 4.7242 -2.9139 3.1795 27 1 6.3469 -2.6628 2.4950 28 1 3.8125 -5.0968 -2.1186 29 1 2.9643 -2.8298 -1.6934 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075792601.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:45 Heat of formation + Delta-G solvation = -27.969452 kcal Electronic energy + Delta-G solvation = -16708.256391 eV Core-core repulsion = 13764.148676 eV Total energy + Delta-G solvation = -2944.107715 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.66241 -39.60044 -36.53308 -35.78431 -33.35445 -31.56908 -30.19162 -28.79465 -25.49150 -23.08235 -22.93349 -21.09536 -19.27572 -17.72012 -17.01180 -16.61862 -15.77825 -15.44729 -14.90508 -14.33477 -13.87290 -13.75880 -13.59925 -13.10402 -12.97488 -12.56928 -12.13272 -11.64478 -11.57638 -11.35072 -11.04616 -10.93996 -10.71313 -10.50151 -10.18948 -10.05715 -9.16403 -8.53095 -8.39373 -8.10601 -7.48221 -6.61265 -4.26554 1.37662 1.48670 2.25797 3.13840 3.27012 3.42814 3.84931 4.29309 4.36980 4.87984 4.93022 5.17012 5.31621 5.37104 5.51899 5.68398 5.76222 5.85724 6.02560 6.16998 6.27142 6.33115 6.41476 6.53671 6.65897 6.89697 7.10148 7.64071 8.12883 8.21384 8.27542 8.72762 9.42953 10.77074 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.030850 B = 0.007472 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.410115 B = 3746.268062 C = 4395.392623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.036 3.964 3 Si 1.048 2.952 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.585 4.585 8 H 0.066 0.934 9 C 0.220 3.780 10 H 0.011 0.989 11 N -0.683 5.683 12 C 0.044 3.956 13 C -0.071 4.071 14 C -0.047 4.047 15 C -0.079 4.079 16 Cl -0.068 7.068 17 C 0.086 3.914 18 F -0.138 7.138 19 C -0.154 4.154 20 C -0.068 4.068 21 C -0.028 4.028 22 H 0.272 0.728 23 H 0.340 0.660 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.009 -4.922 0.949 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.171 4.171 3 Si 0.877 3.123 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.623 4.623 8 H 0.084 0.916 9 C 0.113 3.887 10 H 0.028 0.972 11 N -0.320 5.320 12 C -0.086 4.086 13 C -0.109 4.109 14 C -0.048 4.048 15 C -0.107 4.107 16 Cl -0.039 7.039 17 C 0.066 3.934 18 F -0.117 7.117 19 C -0.173 4.173 20 C -0.086 4.086 21 C -0.029 4.029 22 H 0.082 0.918 23 H 0.163 0.837 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.677 -3.982 1.359 11.477 hybrid contribution 0.749 -1.428 -0.393 1.660 sum 11.427 -5.410 0.965 12.679 Atomic orbital electron populations 1.70817 1.06808 1.31266 1.43741 1.25740 0.96258 1.02220 0.92886 0.83953 0.75430 0.76380 0.76576 1.20492 1.21035 1.20819 1.21893 0.93261 0.96467 1.50726 0.91610 1.18363 0.97310 0.87543 0.85522 0.97192 1.61448 1.17613 1.29582 1.23361 1.21970 0.92013 0.94929 0.99646 1.20542 1.00421 0.95436 0.94460 1.19417 0.96505 0.91449 0.97468 1.20861 1.01403 0.95518 0.92880 1.98324 1.63640 1.81824 1.60105 1.17239 0.99657 0.81080 0.95410 1.91470 1.87176 1.38486 1.94542 1.21039 0.99465 0.96965 0.99853 1.21292 0.97194 0.92536 0.97611 1.20030 0.92748 0.97867 0.92266 0.91796 0.83691 0.91275 0.95716 0.89684 0.90777 0.84500 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.69 55.43 0.76 -24.93 15 2 C 0.04 0.96 5.40 -17.82 -0.10 0.87 15 3 Si 1.05 23.01 26.46 -169.99 -4.50 18.51 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -5.62 5.60 56.52 0.32 -5.30 15 6 H -0.28 -5.92 7.11 56.52 0.40 -5.51 15 7 C -0.58 -15.11 8.17 -34.44 -0.28 -15.39 15 8 H 0.07 1.83 7.15 -52.49 -0.38 1.45 15 9 C 0.22 4.92 2.01 -70.20 -0.14 4.78 15 10 H 0.01 0.25 6.82 -51.93 -0.35 -0.11 15 11 N -0.68 -14.47 6.45 -109.28 -0.70 -15.18 15 12 C 0.04 0.76 6.58 -3.73 -0.02 0.74 15 13 C -0.07 -1.17 5.26 -27.93 -0.15 -1.32 15 14 C -0.05 -0.88 5.77 -104.57 -0.60 -1.48 15 15 C -0.08 -1.38 6.32 -39.35 -0.25 -1.63 15 16 Cl -0.07 -1.03 27.04 -51.86 -1.40 -2.43 15 17 C 0.09 1.47 7.27 -39.46 -0.29 1.19 15 18 F -0.14 -2.28 16.83 2.25 0.04 -2.25 15 19 C -0.15 -2.54 10.03 -39.60 -0.40 -2.94 15 20 C -0.07 -1.27 8.73 -39.49 -0.34 -1.61 15 21 C -0.03 -0.57 5.47 -104.61 -0.57 -1.14 15 22 H 0.27 7.84 8.73 -40.82 -0.36 7.48 15 23 H 0.34 7.24 5.33 -39.29 -0.21 7.03 15 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 15 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 27 H 0.07 1.06 7.36 -51.93 -0.38 0.68 15 28 H 0.14 1.86 8.06 -52.49 -0.42 1.44 15 29 H 0.15 2.74 7.16 -52.49 -0.38 2.36 15 LS Contribution 256.26 15.07 3.86 3.86 Total: -1.00 -27.40 256.26 -7.71 -35.11 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.62 Total: 5.24 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -3.14 Total: -17.95 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.05 Total: -40.11 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.50 Total: 18.51 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.40 Total: -2.43 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.40 -7.71 -35.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075792601.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.144 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds