Wall clock time and date at job start Mon Mar 30 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38294 * 119.93990 * 2 1 4 4 C 1.38064 * 120.15367 * 179.97438 * 3 2 1 5 5 C 1.39085 * 120.03708 * 0.25809 * 4 3 2 6 6 N 1.39550 * 120.06340 * 179.72517 * 5 4 3 7 7 C 1.34773 * 120.00001 * 24.85673 * 6 5 4 8 8 O 1.21747 * 120.00156 * 5.52427 * 7 6 5 9 9 C 1.46154 * 119.99870 * 185.52901 * 7 6 5 10 10 H 1.07989 * 120.00219 * 359.97438 * 9 7 6 11 11 C 1.40129 * 119.99622 * 180.02562 * 9 7 6 12 12 N 1.30633 * 120.00229 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99726 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47254 * 89.99662 * 13 11 9 15 15 H 1.48505 * 109.46831 * 209.99696 * 13 11 9 16 16 H 1.48498 * 109.46733 * 329.99672 * 13 11 9 17 17 C 1.39008 * 119.87897 * 359.50724 * 5 4 3 18 18 Cl 1.73596 * 120.07880 * 180.25464 * 17 5 4 19 19 C 1.38661 * 119.84073 * 0.48986 * 17 5 4 20 20 O 1.35922 * 120.01528 * 179.72210 * 19 17 5 21 21 H 1.08998 * 109.47103 * 90.00077 * 1 2 3 22 22 H 1.08998 * 109.47513 * 209.99893 * 1 2 3 23 23 H 1.08996 * 109.47215 * 330.00285 * 1 2 3 24 24 H 1.07997 * 119.91758 * 0.02562 * 3 2 1 25 25 H 1.08006 * 119.98408 * 179.97438 * 4 3 2 26 26 H 0.97001 * 119.99879 * 204.86752 * 6 5 4 27 27 H 0.97004 * 120.00261 * 179.97438 * 12 11 9 28 28 H 0.96699 * 113.99835 * 270.02642 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5778 1.2035 0.0005 5 6 4.2785 0.0021 -0.0044 6 7 5.6740 0.0067 -0.0096 7 6 6.3462 1.0670 0.4805 8 8 5.7408 1.9758 1.0187 9 6 7.8020 1.1259 0.3656 10 1 8.3391 0.3197 -0.1115 11 6 8.5010 2.2282 0.8757 12 7 7.8514 3.2033 1.4533 13 14 10.3618 2.3031 0.7296 14 1 10.7319 2.9721 -0.5435 15 1 10.9174 3.0717 1.8724 16 1 10.9153 0.9252 0.7438 17 6 3.5862 -1.2033 0.0006 18 17 4.4556 -2.7059 0.0012 19 6 2.1996 -1.2027 0.0001 20 8 1.5191 -2.3793 -0.0008 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6549 2.1323 0.0004 25 1 4.1141 2.1411 0.0001 26 1 6.1601 -0.7532 -0.3661 27 1 8.3352 3.9661 1.8067 28 1 1.3229 -2.7194 -0.8844 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083353643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:39 Heat of formation + Delta-G solvation = -92.256461 kcal Electronic energy + Delta-G solvation = -16277.030138 eV Core-core repulsion = 13317.761939 eV Total energy + Delta-G solvation = -2959.268198 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27391 -39.65419 -37.56615 -37.37820 -35.41176 -34.60607 -32.32185 -30.72396 -28.89205 -26.75798 -23.91442 -23.12634 -21.69222 -19.65508 -19.23419 -17.80369 -17.38793 -17.04164 -16.53366 -15.96840 -15.59825 -15.14518 -14.86065 -14.54173 -14.11090 -13.62514 -13.40762 -13.24777 -13.15919 -12.82325 -12.78295 -12.53984 -12.26440 -12.07401 -12.03931 -11.55145 -11.08147 -10.82854 -9.92585 -9.56260 -8.72524 -8.40780 -6.99339 0.14526 0.28077 1.13914 1.39134 1.39745 1.55834 2.18136 2.27179 2.64514 2.69016 3.28086 3.51086 3.97921 4.02154 4.32044 4.43258 4.66437 4.84741 4.92234 5.11271 5.21016 5.28635 5.30239 5.54399 5.67450 5.75391 6.07179 6.17509 6.73369 6.78537 7.19176 8.25197 8.51449 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.006018 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.590969 B = 4651.706007 C = 5410.747820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.141 4.141 3 C -0.075 4.075 4 C -0.162 4.162 5 C 0.181 3.819 6 N -0.685 5.685 7 C 0.528 3.472 8 O -0.597 6.597 9 C -0.563 4.563 10 H 0.091 0.909 11 C 0.032 3.968 12 N -0.807 5.807 13 Si 1.001 2.999 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.250 1.250 17 C -0.129 4.129 18 Cl -0.059 7.059 19 C 0.141 3.859 20 O -0.485 6.485 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.152 0.848 25 H 0.123 0.877 26 H 0.405 0.595 27 H 0.280 0.720 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -8.073 -5.922 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C -0.094 4.094 4 C -0.184 4.184 5 C 0.081 3.919 6 N -0.327 5.327 7 C 0.336 3.664 8 O -0.482 6.482 9 C -0.599 4.599 10 H 0.109 0.891 11 C -0.185 4.185 12 N -0.436 5.436 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.195 1.195 16 H -0.174 1.174 17 C -0.160 4.160 18 Cl -0.030 7.030 19 C 0.094 3.906 20 O -0.297 6.297 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.170 0.830 25 H 0.141 0.859 26 H 0.240 0.760 27 H 0.090 0.910 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.749 -7.329 -4.853 13.126 hybrid contribution 1.317 -0.332 -0.521 1.455 sum -8.432 -7.660 -5.374 12.596 Atomic orbital electron populations 1.20625 0.87428 1.03664 1.03489 1.20334 0.98519 0.90667 1.04790 1.21158 0.92262 0.98902 0.97030 1.21488 0.95238 0.97441 1.04188 1.17854 0.84832 0.92578 0.96656 1.43831 1.03048 1.22531 1.63327 1.18722 0.89280 0.80301 0.78081 1.90550 1.70184 1.39345 1.48163 1.21384 0.89957 1.07643 1.40875 0.89133 1.26972 1.06438 0.93451 0.91629 1.70115 1.39817 1.06797 1.26844 0.84963 0.74275 0.79887 0.78911 1.18351 1.19545 1.17372 1.21150 0.92518 0.85936 1.16369 1.98302 1.76538 1.30845 1.97324 1.17654 0.86308 0.86592 1.00013 1.84750 1.75048 1.34882 1.35023 0.89498 0.90730 0.90543 0.83014 0.85879 0.75961 0.91009 0.73251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.79 71.23 0.70 -1.14 15 2 C -0.14 -4.00 5.90 -19.72 -0.12 -4.12 15 3 C -0.07 -2.47 9.69 22.24 0.22 -2.26 15 4 C -0.16 -7.03 8.71 22.43 0.20 -6.83 15 5 C 0.18 7.86 6.43 38.30 0.25 8.10 15 6 N -0.68 -32.45 5.17 -307.51 -1.59 -34.03 15 7 C 0.53 30.24 7.54 86.30 0.65 30.89 15 8 O -0.60 -38.18 12.17 -4.50 -0.05 -38.23 15 9 C -0.56 -31.16 9.54 24.79 0.24 -30.92 15 10 H 0.09 4.50 7.85 -2.92 -0.02 4.48 15 11 C 0.03 1.73 5.50 85.33 0.47 2.20 15 12 N -0.81 -47.37 11.82 21.85 0.26 -47.11 15 13 Si 1.00 39.48 29.56 68.60 2.03 41.51 15 14 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.25 -9.27 7.11 99.48 0.71 -8.57 15 17 C -0.13 -4.67 6.35 22.56 0.14 -4.52 15 18 Cl -0.06 -1.90 27.33 -2.72 -0.07 -1.97 15 19 C 0.14 4.28 6.67 22.50 0.15 4.43 15 20 O -0.48 -11.61 12.00 -92.68 -1.11 -12.72 15 21 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.07 1.38 7.52 -2.39 -0.02 1.37 15 23 H 0.08 1.32 8.08 -2.39 -0.02 1.30 15 24 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 25 H 0.12 6.32 5.78 -2.91 -0.02 6.31 15 26 H 0.40 17.07 7.74 -92.71 -0.72 16.36 15 27 H 0.28 14.79 8.29 -92.71 -0.77 14.02 15 28 H 0.41 5.71 9.06 -74.06 -0.67 5.04 15 Total: -1.00 -71.84 266.00 2.19 -69.65 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.16 Total: 27.07 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 2.89 Total: -4.17 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.33 Total: -81.15 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -1.17 Total: -50.95 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -71.84 2.19 -69.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083353643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.605 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds