Wall clock time and date at job start Mon Mar 30 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34718 * 116.99859 * 2 1 4 4 O 1.21480 * 120.00372 * 0.02562 * 3 2 1 5 5 C 1.47690 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.09358 * 359.97438 * 5 3 2 7 7 C 1.37969 * 120.03757 * 180.02562 * 6 5 3 8 8 C 1.38341 * 120.23359 * 0.02562 * 7 6 5 9 9 Cl 1.73595 * 119.89980 * 179.97438 * 8 7 6 10 10 C 1.39297 * 120.19061 * 359.97228 * 8 7 6 11 11 N 1.39375 * 120.01930 * 179.97438 * 10 8 7 12 12 C 1.36837 * 119.99957 * 179.72771 * 11 10 8 13 13 H 1.08004 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.38785 * 119.99873 * 180.02562 * 12 11 10 15 15 N 1.31595 * 120.00141 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99762 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47434 * 60.00066 * 16 14 12 18 18 H 1.48507 * 109.47117 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 299.99772 * 16 14 12 20 20 C 1.38758 * 119.96109 * 0.25953 * 10 8 7 21 21 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47656 * 299.99531 * 1 2 3 23 23 H 1.08997 * 109.47474 * 60.00098 * 1 2 3 24 24 H 1.07995 * 119.97928 * 0.02562 * 6 5 3 25 25 H 1.07998 * 119.88049 * 179.97438 * 7 6 5 26 26 H 0.96996 * 120.00242 * 0.02562 * 11 10 8 27 27 H 0.97000 * 119.99786 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.11923 * 179.74231 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2192 0.0005 5 6 3.5384 1.2777 -0.0006 6 6 4.3014 0.1070 -0.0006 7 6 5.6791 0.1805 -0.0006 8 6 6.3109 1.4112 0.0000 9 17 8.0449 1.4937 0.0006 10 6 5.5598 2.5843 -0.0001 11 7 6.2001 3.8223 0.0010 12 6 5.4618 4.9744 -0.0047 13 1 4.3829 4.9244 -0.0096 14 6 6.0994 6.2071 -0.0041 15 7 7.4139 6.2680 0.0023 16 14 5.0915 7.7799 -0.0112 17 1 4.2299 7.8212 1.1976 18 1 6.0033 8.9521 -0.0087 19 1 4.2402 7.8169 -1.2273 20 6 4.1737 2.5197 0.0048 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.8123 -0.8559 -0.0006 25 1 6.2663 -0.7258 -0.0002 26 1 7.1690 3.8672 0.0014 27 1 7.8595 7.1296 0.0023 28 1 3.5889 3.4275 0.0090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084015841.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:41 Heat of formation + Delta-G solvation = -84.130279 kcal Electronic energy + Delta-G solvation = -16055.595091 eV Core-core repulsion = 13096.679270 eV Total energy + Delta-G solvation = -2958.915821 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52274 -40.03255 -37.48646 -37.18718 -36.89822 -33.92641 -31.96069 -30.08674 -28.55688 -26.68475 -24.90317 -22.90726 -21.90973 -19.66155 -19.22402 -18.14005 -17.32286 -17.30140 -16.93338 -16.59810 -15.72956 -14.89785 -14.82123 -14.77891 -14.58419 -14.20811 -13.57899 -13.16078 -13.15829 -13.01841 -12.71512 -12.49839 -12.16324 -12.05540 -11.97705 -11.76690 -11.60178 -11.56126 -10.71503 -9.73512 -8.69696 -8.55834 -5.81349 -0.25262 0.69971 1.38851 1.41160 1.41881 1.49925 1.59780 1.72811 2.23044 2.77053 3.19918 3.29252 3.84084 4.00160 4.36132 4.38468 4.46801 4.56739 4.68306 4.75479 5.02866 5.16619 5.21359 5.37810 5.47453 5.52822 5.70337 6.01768 6.72119 6.74033 7.32503 7.48895 8.61266 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.007734 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.138885 B = 3619.370384 C = 5307.358638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.515 3.485 4 O -0.540 6.540 5 C -0.075 4.075 6 C -0.159 4.159 7 C -0.049 4.049 8 C -0.139 4.139 9 Cl -0.084 7.084 10 C 0.184 3.816 11 N -0.569 5.569 12 C -0.327 4.327 13 H 0.102 0.898 14 C -0.021 4.021 15 N -0.920 5.920 16 Si 0.996 3.004 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.267 1.267 20 C -0.164 4.164 21 H 0.141 0.859 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.162 0.838 25 H 0.161 0.839 26 H 0.400 0.600 27 H 0.279 0.721 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 -12.350 -0.015 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.362 3.638 4 O -0.432 6.432 5 C -0.078 4.078 6 C -0.182 4.182 7 C -0.068 4.068 8 C -0.173 4.173 9 Cl -0.056 7.056 10 C 0.064 3.936 11 N -0.173 5.173 12 C -0.457 4.457 13 H 0.120 0.880 14 C -0.221 4.221 15 N -0.558 5.558 16 Si 0.819 3.181 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.189 4.189 21 H 0.159 0.841 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.179 0.821 25 H 0.179 0.821 26 H 0.236 0.764 27 H 0.088 0.912 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.092 -11.564 -0.010 13.565 hybrid contribution 0.228 1.333 -0.005 1.352 sum -6.864 -10.231 -0.015 12.320 Atomic orbital electron populations 1.23620 0.74406 1.06068 1.02486 1.86543 1.25112 1.30971 1.83779 1.21378 0.89291 0.81504 0.71639 1.90797 1.67539 1.37367 1.47470 1.18857 0.88519 0.94599 1.05803 1.20959 0.92441 0.97364 1.07436 1.20862 0.94418 0.95186 0.96289 1.20555 0.83247 0.94152 1.19303 1.98292 1.11238 1.98524 1.97497 1.17647 0.91633 0.85658 0.98671 1.41115 1.08556 1.01812 1.65835 1.19975 0.92894 0.84026 1.48766 0.88010 1.26155 0.96957 1.02431 0.96595 1.69784 1.08870 1.27992 1.49182 0.84922 0.77610 0.76233 0.79349 1.19182 1.20023 1.19163 1.20406 0.91892 0.97224 1.09332 0.84121 0.92086 0.92093 0.82079 0.82116 0.76354 0.91195 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 15 2 O -0.35 -9.31 9.81 -56.28 -0.55 -9.86 15 3 C 0.52 17.92 7.90 70.32 0.56 18.48 15 4 O -0.54 -21.89 16.13 19.90 0.32 -21.57 15 5 C -0.08 -2.76 5.87 -20.11 -0.12 -2.88 15 6 C -0.16 -4.79 9.61 22.57 0.22 -4.57 15 7 C -0.05 -1.49 9.80 22.23 0.22 -1.27 15 8 C -0.14 -5.31 6.35 22.55 0.14 -5.17 15 9 Cl -0.08 -3.05 27.57 -2.72 -0.07 -3.13 15 10 C 0.18 8.32 6.61 38.32 0.25 8.57 15 11 N -0.57 -29.06 5.39 -184.32 -0.99 -30.06 15 12 C -0.33 -17.48 9.55 84.04 0.80 -16.68 15 13 H 0.10 5.33 5.68 -2.91 -0.02 5.31 15 14 C -0.02 -1.11 5.50 84.86 0.47 -0.64 15 15 N -0.92 -50.52 13.05 21.64 0.28 -50.23 15 16 Si 1.00 41.81 29.55 68.60 2.03 43.84 15 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 18 H -0.28 -11.18 7.11 99.48 0.71 -10.47 15 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 20 C -0.16 -7.16 8.85 22.70 0.20 -6.96 15 21 H 0.14 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.16 3.72 7.60 -2.91 -0.02 3.69 15 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.40 20.94 6.54 -92.71 -0.61 20.34 15 27 H 0.28 14.38 8.31 -92.71 -0.77 13.61 15 28 H 0.12 5.54 5.54 -2.91 -0.02 5.53 15 Total: -1.00 -60.97 269.58 5.55 -55.42 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.61 Total: 24.99 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 3.94 Total: -9.40 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -0.71 Total: -80.29 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.23 Total: -31.43 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.13 kcal Total: -60.97 5.55 -55.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084015841.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.711 kcal (2) G-P(sol) polarization free energy of solvation -60.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds