Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36031 * 117.00124 * 2 1 4 4 C 1.38494 * 120.06696 * 0.02562 * 3 2 1 5 5 C 1.38287 * 120.02946 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.91425 * 179.97438 * 5 4 3 7 7 C 1.38357 * 120.16537 * 359.95898 * 5 4 3 8 8 Cl 1.73602 * 119.93127 * 180.02562 * 7 5 4 9 9 C 1.38318 * 120.13794 * 0.02562 * 7 5 4 10 10 C 1.38726 * 119.96758 * 359.78005 * 9 7 5 11 11 N 1.39952 * 120.08876 * 180.25756 * 10 9 7 12 12 C 1.46504 * 119.99631 * 0.21492 * 11 10 9 13 13 C 1.50699 * 109.47078 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00210 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00028 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99859 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99890 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46966 * 59.99842 * 17 15 13 19 19 H 1.48496 * 109.46734 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47027 * 299.99780 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99828 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99949 * 1 2 3 24 24 H 1.08001 * 119.98637 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.46715 * 90.00452 * 6 5 4 26 26 H 1.08997 * 109.46858 * 209.99925 * 6 5 4 27 27 H 1.08998 * 109.47193 * 329.99878 * 6 5 4 28 28 H 1.07994 * 120.01959 * 180.02562 * 9 7 5 29 29 H 0.96995 * 120.00776 * 180.21058 * 11 10 9 30 30 H 1.08997 * 109.47479 * 299.99518 * 12 11 10 31 31 H 1.08999 * 109.47439 * 60.00343 * 12 11 10 32 32 H 0.97001 * 120.00070 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2937 2.3744 0.0005 5 6 1.9224 3.6062 0.0000 6 6 1.1005 4.8694 0.0000 7 6 3.3039 3.6816 -0.0002 8 17 4.0867 5.2311 -0.0002 9 6 4.0626 2.5251 -0.0004 10 6 3.4378 1.2865 0.0042 11 7 4.2030 0.1147 0.0094 12 6 5.6658 0.1951 0.0148 13 6 6.2453 -1.1959 0.0204 14 1 5.5897 -2.0542 0.0204 15 6 7.6127 -1.3731 0.0266 16 7 8.4111 -0.3281 0.0281 17 14 8.3311 -3.0974 0.0328 18 1 7.8804 -3.8258 -1.1803 19 1 9.8138 -3.0158 0.0384 20 1 7.8702 -3.8213 1.2447 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.2151 2.3189 0.0014 25 1 0.9029 5.1742 1.0277 26 1 1.6482 5.6591 -0.5142 27 1 0.1562 4.6885 -0.5134 28 1 5.1408 2.5862 -0.0002 29 1 3.7649 -0.7507 0.0096 30 1 6.0038 0.7263 -0.8750 31 1 5.9970 0.7299 0.9050 32 1 9.3731 -0.4527 0.0320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084909232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -47.784600 kcal Electronic energy + Delta-G solvation = -16331.984054 eV Core-core repulsion = 13510.477395 eV Total energy + Delta-G solvation = -2821.506659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23930 -38.73414 -37.52902 -36.64987 -34.78329 -32.32332 -30.94663 -29.26870 -28.25116 -26.29479 -24.79637 -22.86211 -22.03018 -19.43162 -18.34015 -17.70814 -17.41620 -16.63430 -16.57835 -15.46653 -15.26471 -15.13572 -15.09243 -14.71901 -14.57654 -14.05685 -13.27255 -13.20414 -13.08565 -12.88126 -12.82915 -12.67603 -12.47673 -12.26419 -12.04386 -11.62462 -11.59815 -11.46723 -10.90493 -10.48745 -9.41224 -8.30944 -7.97778 -6.45182 0.28675 0.52007 1.24244 1.40404 1.43830 1.52112 2.32706 2.40659 2.71962 2.86641 3.04047 3.81625 4.02739 4.19824 4.42150 4.49131 4.51057 4.71322 4.73877 4.81531 4.90848 4.91729 4.99955 5.14149 5.27271 5.29817 5.50139 5.53159 5.71434 5.86951 6.29130 6.51473 6.74510 7.10988 7.28032 8.80731 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.005851 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.581172 B = 4784.604823 C = 6073.429031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.049 3.951 4 C -0.143 4.143 5 C -0.112 4.112 6 C -0.103 4.103 7 C -0.025 4.025 8 Cl -0.072 7.072 9 C -0.185 4.185 10 C 0.186 3.814 11 N -0.728 5.728 12 C 0.274 3.726 13 C -0.559 4.559 14 H 0.069 0.931 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.979 3.021 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.266 1.266 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.170 0.830 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.400 0.600 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.348 6.498 -0.048 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C 0.000 4.000 4 C -0.162 4.162 5 C -0.115 4.115 6 C -0.159 4.159 7 C -0.053 4.053 8 Cl -0.043 7.043 9 C -0.210 4.210 10 C 0.080 3.920 11 N -0.355 5.355 12 C 0.151 3.849 13 C -0.597 4.597 14 H 0.087 0.913 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.802 3.198 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.191 1.191 21 H 0.132 0.868 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.187 0.813 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.235 0.765 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.787 6.510 -0.047 18.005 hybrid contribution 0.866 -0.779 0.012 1.165 sum -15.921 5.732 -0.034 16.921 Atomic orbital electron populations 1.23325 0.76257 1.05361 1.02372 1.86010 1.23599 1.26080 1.89682 1.18555 0.89546 0.86158 1.05753 1.21033 1.00858 0.89342 1.04957 1.19557 0.90746 0.96908 1.04311 1.20758 0.99246 0.92656 1.03261 1.20421 0.92583 0.85348 1.06919 1.98308 1.81150 1.27827 1.97029 1.20264 0.99640 0.89984 1.11116 1.17502 0.88498 0.87792 0.98215 1.45011 1.05918 1.04961 1.79652 1.18573 0.75830 0.96729 0.93798 1.21528 0.92641 0.92511 1.53004 0.91288 1.25921 0.97111 1.02085 0.93837 1.70072 1.04449 1.32007 1.49928 0.85299 0.77027 0.78226 0.79246 1.19069 1.20509 1.19061 0.86757 0.91429 0.91443 0.81320 0.90252 0.91435 0.89368 0.86953 0.76502 0.99083 0.99094 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.27 9.74 -93.90 -0.91 -11.19 16 3 C 0.05 1.62 6.70 22.59 0.15 1.78 16 4 C -0.14 -3.75 8.69 22.34 0.19 -3.55 16 5 C -0.11 -3.08 5.88 -19.82 -0.12 -3.19 16 6 C -0.10 -1.98 9.61 71.24 0.68 -1.29 16 7 C -0.03 -0.86 6.31 22.32 0.14 -0.72 16 8 Cl -0.07 -2.18 27.27 -2.72 -0.07 -2.26 16 9 C -0.19 -7.57 9.09 22.41 0.20 -7.36 16 10 C 0.19 7.69 6.67 38.22 0.25 7.94 16 11 N -0.73 -33.81 5.72 -342.70 -1.96 -35.77 16 12 C 0.27 15.02 4.67 85.63 0.40 15.42 16 13 C -0.56 -31.66 9.28 25.60 0.24 -31.42 16 14 H 0.07 3.71 7.60 -2.91 -0.02 3.69 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 17 Si 0.98 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 23 H 0.07 0.99 7.66 -2.38 -0.02 0.97 16 24 H 0.17 3.01 6.30 -2.91 -0.02 2.99 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.34 6.89 -2.39 -0.02 1.32 16 27 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 28 H 0.11 5.15 6.74 -2.91 -0.02 5.13 16 29 H 0.40 17.77 7.68 -92.71 -0.71 17.06 16 30 H -0.01 -0.51 7.94 -2.39 -0.02 -0.53 16 31 H -0.01 -0.52 7.96 -2.39 -0.02 -0.54 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -65.38 288.17 3.51 -61.87 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.43 Total: 16.84 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.72 Total: -19.87 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -1.68 Total: -90.87 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.91 Total: -11.19 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.26 kcal Total: -65.38 3.51 -61.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084909232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.083 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds