Wall clock time and date at job start Mon Mar 30 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86807 * 119.99681 * 2 1 4 4 H 1.48510 * 109.46547 * 274.97977 * 3 2 1 5 5 H 1.48496 * 109.47380 * 34.97711 * 3 2 1 6 6 H 1.48494 * 109.47217 * 154.98206 * 3 2 1 7 7 C 1.39709 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00470 * 186.19297 * 7 2 1 9 9 C 1.41161 * 120.00055 * 6.20026 * 7 2 1 10 10 C 1.37701 * 122.86450 * 174.08161 * 9 7 2 11 11 S 1.70987 * 108.84045 * 180.02562 * 10 9 7 12 12 C 1.75898 * 90.81034 * 359.97438 * 11 10 9 13 13 C 1.50698 * 124.99352 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.57464 * 194.77199 * 13 12 11 15 15 C 1.53011 * 109.69796 * 74.41823 * 13 12 11 16 16 C 1.52576 * 110.00166 * 177.07662 * 15 13 12 17 17 C 1.52580 * 110.69140 * 70.70439 * 16 15 13 18 18 C 1.53100 * 109.95595 * 289.34692 * 17 16 15 19 19 S 1.81743 * 108.83951 * 63.02632 * 18 17 16 20 20 N 1.28799 * 110.01289 * 0.22857 * 12 11 10 21 21 H 0.97005 * 120.00230 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.57619 * 0.02562 * 10 9 7 23 23 H 1.09007 * 109.33202 * 56.94053 * 15 13 12 24 24 H 1.09000 * 109.41120 * 297.26755 * 15 13 12 25 25 H 1.08996 * 109.22686 * 310.40420 * 16 15 13 26 26 H 1.08997 * 109.23217 * 191.00158 * 16 15 13 27 27 H 1.08998 * 109.39209 * 49.49411 * 17 16 15 28 28 H 1.09006 * 109.39340 * 169.19811 * 17 16 15 29 29 H 1.09003 * 109.57494 * 182.83218 * 18 17 16 30 30 H 1.08994 * 109.57844 * 303.21462 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.3863 2.1072 -1.3949 5 1 1.4982 2.6201 0.8026 6 1 3.5903 1.4123 0.5921 7 6 2.0088 -1.2099 0.0005 8 1 3.0841 -1.2126 0.1014 9 6 1.3093 -2.4289 -0.1309 10 6 1.9436 -3.6446 -0.2567 11 16 0.7617 -4.8728 -0.3918 12 6 -0.5265 -3.6811 -0.2707 13 6 -2.0000 -3.9942 -0.3105 14 1 -2.5639 -3.0767 -0.4787 15 6 -2.4294 -4.6244 1.0160 16 6 -3.9339 -4.8778 1.0107 17 6 -4.2855 -6.0162 0.0574 18 6 -4.0916 -5.5628 -1.3920 19 16 -2.3365 -5.1706 -1.6544 20 7 -0.0251 -2.5010 -0.1483 21 1 -0.4851 0.8401 -0.0004 22 1 3.0127 -3.7973 -0.2682 23 1 -2.1791 -3.9490 1.8342 24 1 -1.9038 -5.5692 1.1551 25 1 -4.4494 -3.9715 0.6930 26 1 -4.2574 -5.1403 2.0179 27 1 -3.6386 -6.8699 0.2591 28 1 -5.3248 -6.3076 0.2095 29 1 -4.3922 -6.3631 -2.0683 30 1 -4.6963 -4.6759 -1.5812 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087716438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:12 Heat of formation + Delta-G solvation = 1.935217 kcal Electronic energy + Delta-G solvation = -14455.804731 eV Core-core repulsion = 12081.250662 eV Total energy + Delta-G solvation = -2374.554069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88070 -37.78695 -35.27457 -33.38371 -30.76550 -28.43470 -27.57452 -24.96800 -22.96679 -21.66620 -20.65746 -19.72437 -17.87480 -17.07303 -16.96278 -16.01789 -15.70067 -15.24592 -15.02560 -14.71306 -14.48155 -13.91073 -13.67734 -13.47253 -13.35761 -12.90375 -12.67230 -12.43330 -12.35306 -12.19324 -11.82426 -11.60384 -11.38859 -11.18461 -10.68801 -10.00273 -9.88520 -9.31473 -8.69573 -8.50213 -6.43001 0.15550 0.76559 1.05165 1.35461 1.39394 1.49713 1.53238 1.82326 2.21670 2.33163 3.27449 3.41703 3.75140 3.86342 4.03984 4.16242 4.23050 4.52819 4.65381 4.75104 4.82661 4.97552 5.04104 5.06118 5.11977 5.16018 5.26191 5.38192 5.45260 6.12031 6.49906 6.83397 7.59170 8.40075 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.006433 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.414870 B = 4351.540771 C = 4796.315503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.027 3.973 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.084 0.916 9 C 0.194 3.806 10 C -0.488 4.488 11 S 0.048 5.952 12 C 0.066 3.934 13 C 0.045 3.955 14 H 0.093 0.907 15 C -0.106 4.106 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.074 4.074 19 S -0.287 6.287 20 N -0.434 5.434 21 H 0.281 0.719 22 H 0.140 0.860 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.127 0.873 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 -7.818 0.905 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.192 4.192 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.506 4.506 8 H 0.102 0.898 9 C 0.072 3.928 10 C -0.627 4.627 11 S 0.297 5.703 12 C -0.218 4.218 13 C -0.087 4.087 14 H 0.111 0.889 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.155 4.155 18 C -0.222 4.222 19 S -0.060 6.060 20 N -0.150 5.150 21 H 0.091 0.909 22 H 0.158 0.842 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.145 0.855 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.469 -8.653 0.030 13.582 hybrid contribution 0.680 2.185 0.827 2.433 sum -9.789 -6.468 0.857 11.764 Atomic orbital electron populations 1.70197 1.08632 1.29432 1.32599 1.26938 0.95869 1.04543 0.91858 0.85049 0.78954 0.75479 0.79295 1.18872 1.18811 1.18028 1.19315 0.94827 0.89760 1.46708 0.89808 1.18432 0.86138 0.94227 0.94048 1.25524 1.02467 0.96090 1.38632 1.82305 0.98883 1.13861 1.75234 1.27668 0.98763 0.91112 1.04246 1.21470 0.89678 0.99907 0.97691 0.88879 1.21780 0.98659 1.00891 0.93350 1.21526 0.92758 0.99596 1.02002 1.21725 1.04075 0.98203 0.91447 1.23672 0.91150 1.05533 1.01834 1.87250 1.18028 1.57645 1.43097 1.67371 1.12349 1.21001 1.14263 0.90864 0.84243 0.91965 0.90419 0.91546 0.88717 0.90604 0.87589 0.85537 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.82 11.72 21.79 0.26 -43.56 16 2 C 0.03 1.45 5.49 85.17 0.47 1.92 16 3 Si 0.99 40.11 29.56 68.60 2.03 42.14 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.47 -27.48 9.23 23.34 0.22 -27.27 16 8 H 0.08 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.19 11.52 6.46 39.46 0.25 11.78 16 10 C -0.49 -26.51 10.98 67.69 0.74 -25.77 16 11 S 0.05 2.22 22.58 -56.49 -1.28 0.94 16 12 C 0.07 3.17 6.32 88.55 0.56 3.73 16 13 C 0.05 1.70 3.03 29.85 0.09 1.79 16 14 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 15 C -0.11 -3.21 5.02 30.46 0.15 -3.05 16 16 C -0.12 -2.51 5.62 30.31 0.17 -2.34 16 17 C -0.12 -1.95 5.75 30.49 0.18 -1.78 16 18 C -0.07 -1.48 6.46 72.02 0.46 -1.02 16 19 S -0.29 -9.30 21.18 -56.49 -1.20 -10.49 16 20 N -0.43 -24.80 8.49 -180.34 -1.53 -26.33 16 21 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 22 H 0.14 7.27 8.06 -2.91 -0.02 7.24 16 23 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 25 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 28 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.91 276.44 2.71 -65.21 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.13 Total: 14.10 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.29 Total: -42.00 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.27 Total: -69.89 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -2.47 Total: -9.55 kcal Total: -67.91 2.71 -65.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087716438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.141 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds