Wall clock time and date at job start Mon Mar 30 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31049 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48495 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47109 * 300.00035 * 3 2 1 6 6 H 1.48507 * 109.47246 * 59.99801 * 3 2 1 7 7 C 1.39739 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00664 * 180.02562 * 7 2 1 9 9 C 1.40893 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.38899 * 126.93024 * 0.02562 * 9 7 2 11 11 N 1.35638 * 109.29157 * 180.02562 * 10 9 7 12 12 H 0.97005 * 124.68954 * 179.97438 * 11 10 9 13 13 C 1.38145 * 110.62253 * 359.97438 * 11 10 9 14 14 C 1.40383 * 107.88865 * 0.02562 * 13 11 10 15 15 C 1.39151 * 120.16453 * 179.97438 * 14 13 11 16 16 C 1.37923 * 119.69262 * 359.78811 * 15 14 13 17 17 C 1.38626 * 120.24738 * 0.46655 * 16 15 14 18 18 C 1.37916 * 120.62566 * 359.50775 * 17 16 15 19 19 C 1.50700 * 120.01371 * 180.23361 * 18 17 16 20 20 F 1.39908 * 109.46858 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.46904 * 119.99903 * 19 18 17 22 22 F 1.39891 * 109.47052 * 240.00231 * 19 18 17 23 23 H 0.96994 * 120.00583 * 0.02562 * 1 2 3 24 24 H 1.07997 * 125.35207 * 359.97438 * 10 9 7 25 25 H 1.07997 * 120.15122 * 179.97438 * 15 14 13 26 26 H 1.07995 * 119.87598 * 180.25488 * 16 15 14 27 27 H 1.08002 * 119.68878 * 179.78957 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 3.7044 1.3464 0.0006 5 1 1.8857 2.3964 -1.2125 6 1 1.8857 2.3965 1.2125 7 6 2.0093 -1.2101 0.0005 8 1 3.0892 -1.2102 0.0010 9 6 1.3049 -2.4303 0.0005 10 6 -0.0740 -2.5980 -0.0005 11 7 -0.3643 -3.9230 0.0005 12 1 -1.2616 -4.2915 0.0004 13 6 0.7946 -4.6750 0.0015 14 6 1.8835 -3.7890 0.0019 15 6 3.1852 -4.2810 0.0034 16 6 3.4006 -5.6433 0.0091 17 6 2.3269 -6.5201 0.0035 18 6 1.0321 -6.0453 0.0024 19 6 -0.1249 -7.0109 0.0015 20 9 0.3623 -8.3224 0.0027 21 9 -0.9064 -6.8033 1.1432 22 9 -0.9045 -6.8036 -1.1414 23 1 -0.4851 0.8399 -0.0004 24 1 -0.8006 -1.7990 -0.0010 25 1 4.0228 -3.5992 0.0033 26 1 4.4096 -6.0283 0.0145 27 1 2.5061 -7.5852 0.0045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089204210.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:13 Heat of formation + Delta-G solvation = -123.432309 kcal Electronic energy + Delta-G solvation = -18444.469994 eV Core-core repulsion = 14944.426019 eV Total energy + Delta-G solvation = -3500.043975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.15664 -48.66658 -48.63652 -41.58091 -37.64213 -35.50209 -33.20192 -30.80096 -29.62536 -26.91051 -26.65964 -23.07481 -22.46152 -21.53697 -19.81758 -19.49547 -19.25283 -17.87980 -17.82708 -16.84896 -16.15694 -15.61411 -15.60377 -15.59342 -15.09386 -14.94189 -14.83481 -14.80347 -14.68866 -14.36792 -13.75890 -13.25832 -12.99832 -12.96751 -12.54626 -12.38573 -12.06388 -11.71286 -11.53938 -11.35797 -10.38817 -8.95244 -8.65105 -8.44147 -6.05071 0.10713 0.84373 1.39597 1.44731 1.58562 1.72170 2.20438 2.29095 2.62374 2.81011 2.88758 3.10561 3.46591 3.59557 4.09267 4.23785 4.53275 4.61133 4.74857 5.06795 5.16612 5.26006 5.44163 5.66588 5.77139 5.87525 6.12633 6.33567 6.67480 7.03608 7.13220 7.22747 8.54323 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.006351 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.457975 B = 4407.454537 C = 4994.422549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.012 3.988 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.447 4.447 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.116 4.116 11 N -0.579 5.579 12 H 0.406 0.594 13 C 0.112 3.888 14 C -0.165 4.165 15 C -0.034 4.034 16 C -0.180 4.180 17 C -0.048 4.048 18 C -0.237 4.237 19 C 0.517 3.483 20 F -0.172 7.172 21 F -0.188 7.188 22 F -0.188 7.188 23 H 0.281 0.719 24 H 0.182 0.818 25 H 0.129 0.871 26 H 0.162 0.838 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -9.253 0.008 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.196 4.196 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.092 0.908 9 C -0.018 4.018 10 C -0.240 4.240 11 N -0.180 5.180 12 H 0.241 0.759 13 C -0.002 4.002 14 C -0.171 4.171 15 C -0.053 4.053 16 C -0.200 4.200 17 C -0.066 4.066 18 C -0.243 4.243 19 C 0.463 3.537 20 F -0.153 7.153 21 F -0.169 7.169 22 F -0.169 7.169 23 H 0.091 0.909 24 H 0.199 0.801 25 H 0.146 0.854 26 H 0.179 0.821 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.187 -9.018 0.008 9.279 hybrid contribution -0.783 0.614 -0.002 0.995 sum 1.404 -8.404 0.006 8.521 Atomic orbital electron populations 1.69517 1.08498 1.29166 1.41301 1.26552 0.95702 1.03973 0.93324 0.85001 0.79079 0.76403 0.78271 1.18254 1.19716 1.19727 1.19056 0.94291 0.90008 1.44618 0.90771 1.18530 0.91532 0.90553 1.01198 1.23193 0.97976 0.82641 1.20167 1.41521 1.05864 1.06058 1.64572 0.75901 1.17950 0.87802 0.91080 1.03343 1.19736 0.93405 0.93797 1.10177 1.20926 0.94545 0.96286 0.93541 1.20998 0.99767 0.91406 1.07802 1.20903 0.89351 1.01260 0.95103 1.18940 0.94191 0.88889 1.22288 1.18254 0.82538 0.79831 0.73093 1.93126 1.87635 1.38300 1.96238 1.93176 1.77117 1.94892 1.51730 1.93174 1.77214 1.94892 1.51630 0.90867 0.80128 0.85358 0.82075 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.43 10.33 21.80 0.23 -44.21 15 2 C 0.01 0.63 5.49 85.17 0.47 1.10 15 3 Si 0.99 38.94 29.56 68.60 2.03 40.97 15 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.38 7.11 99.48 0.71 -9.68 15 6 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 7 C -0.45 -23.99 9.42 23.28 0.22 -23.77 15 8 H 0.07 3.79 7.84 -2.91 -0.02 3.77 15 9 C -0.01 -0.70 6.10 -19.98 -0.12 -0.82 15 10 C -0.12 -6.02 10.88 84.26 0.92 -5.10 15 11 N -0.58 -26.11 5.99 -184.95 -1.11 -27.21 15 12 H 0.41 15.95 8.96 -92.70 -0.83 15.12 15 13 C 0.11 4.94 6.80 38.87 0.26 5.21 15 14 C -0.16 -7.79 6.33 -20.04 -0.13 -7.92 15 15 C -0.03 -1.33 10.09 22.41 0.23 -1.10 15 16 C -0.18 -5.51 10.04 22.29 0.22 -5.29 15 17 C -0.05 -1.47 9.41 22.29 0.21 -1.26 15 18 C -0.24 -8.72 5.38 -19.74 -0.11 -8.83 15 19 C 0.52 17.04 3.32 71.24 0.24 17.27 15 20 F -0.17 -4.93 15.96 44.97 0.72 -4.21 15 21 F -0.19 -6.35 17.24 44.97 0.78 -5.58 15 22 F -0.19 -6.35 17.24 44.97 0.78 -5.58 15 23 H 0.28 13.33 8.30 -92.71 -0.77 12.56 15 24 H 0.18 9.78 5.68 -2.91 -0.02 9.76 15 25 H 0.13 4.56 8.06 -2.91 -0.02 4.53 15 26 H 0.16 3.55 8.06 -2.91 -0.02 3.52 15 27 H 0.16 3.75 7.13 -2.91 -0.02 3.73 15 Total: -1.00 -58.08 254.93 6.24 -51.84 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.41 Total: 24.50 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.41 Total: -30.53 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -0.88 Total: -71.42 kcal Atomic # 9 Polarization: -17.64 SS G_CDS: 2.27 Total: -15.37 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -58.08 6.24 -51.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204210.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.590 kcal (2) G-P(sol) polarization free energy of solvation -58.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds