Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00093 * 2 1 4 4 H 1.48502 * 109.47157 * 239.99985 * 3 2 1 5 5 H 1.48507 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47297 * 119.99803 * 3 2 1 7 7 C 1.40026 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99763 * 162.85751 * 7 2 1 9 9 C 1.40596 * 119.99885 * 342.85597 * 7 2 1 10 10 C 1.40837 * 120.71890 * 335.20809 * 9 7 2 11 11 C 1.37633 * 120.04243 * 179.97438 * 10 9 7 12 12 C 1.50693 * 119.21154 * 180.02562 * 11 10 9 13 13 F 1.39903 * 109.47427 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.47455 * 299.98495 * 12 11 10 15 15 F 1.39902 * 109.47198 * 59.98160 * 12 11 10 16 16 C 1.38400 * 121.57575 * 0.02562 * 11 10 9 17 17 C 1.38974 * 121.05042 * 0.27917 * 16 11 10 18 18 N 1.37892 * 133.43098 * 180.46348 * 17 16 11 19 19 H 0.96998 * 125.57019 * 359.20122 * 18 17 16 20 20 C 1.36547 * 108.85774 * 179.46015 * 18 17 16 21 21 C 1.34922 * 109.52126 * 359.74579 * 20 18 17 22 22 C 1.40563 * 119.63585 * 359.42484 * 17 16 11 23 23 H 0.96994 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.97726 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.47887 * 179.97438 * 16 11 10 26 26 H 1.07992 * 125.24056 * 179.74635 * 20 18 17 27 27 H 1.08001 * 126.10120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0084 -1.2126 -0.0005 8 1 3.0524 -1.2332 -0.2762 9 6 1.3522 -2.4033 0.3578 10 6 0.2154 -2.3763 1.1887 11 6 -0.4165 -3.5503 1.5303 12 6 -1.6318 -3.4995 2.4199 13 9 -2.1072 -4.7977 2.6346 14 9 -1.2884 -2.9198 3.6460 15 9 -2.6282 -2.7339 1.8050 16 6 0.0377 -4.7764 1.0765 17 6 1.1579 -4.8680 0.2592 18 7 1.8149 -5.9256 -0.3337 19 1 1.5703 -6.8604 -0.2495 20 6 2.8695 -5.4422 -1.0538 21 6 2.9097 -4.0978 -0.9474 22 6 1.8360 -3.6981 -0.1245 23 1 -0.4850 0.8400 0.0004 24 1 -0.1609 -1.4337 1.5579 25 1 -0.4839 -5.6767 1.3660 26 1 3.5645 -6.0434 -1.6211 27 1 3.6347 -3.4442 -1.4096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089204504.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = -106.615400 kcal Electronic energy + Delta-G solvation = -18518.517517 eV Core-core repulsion = 15019.202777 eV Total energy + Delta-G solvation = -3499.314740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.31327 -46.85991 -46.75011 -40.04535 -36.01430 -33.77843 -31.00658 -28.76176 -28.47291 -25.48409 -24.33578 -21.40247 -20.37804 -19.55588 -18.09900 -17.65818 -17.62636 -16.39128 -16.16951 -15.04023 -14.76944 -13.74899 -13.70460 -13.34954 -13.28589 -13.25608 -13.09425 -12.99465 -12.97314 -12.74964 -12.06631 -11.74950 -11.22222 -11.20775 -11.08238 -10.66255 -10.34638 -10.06841 -9.70488 -9.39495 -8.49523 -7.20442 -7.01148 -6.82462 -4.43126 2.11564 2.85569 2.98409 3.00683 3.18019 3.58751 3.68927 3.77381 4.07394 4.37455 4.84921 5.04160 5.20388 5.59967 5.76988 6.15649 6.31118 6.52009 6.76385 6.81917 6.92008 7.13217 7.16331 7.48116 7.69941 7.89213 7.91522 8.05267 8.38092 8.53378 8.61659 8.73377 9.91898 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.010635 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.980992 B = 2632.079005 C = 4200.325833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.087 0.913 9 C 0.155 3.845 10 C -0.186 4.186 11 C -0.106 4.106 12 C 0.505 3.495 13 F -0.192 7.192 14 F -0.188 7.188 15 F -0.183 7.183 16 C -0.249 4.249 17 C 0.125 3.875 18 N -0.597 5.597 19 H 0.403 0.597 20 C -0.030 4.030 21 C -0.163 4.163 22 C -0.174 4.174 23 H 0.289 0.711 24 H 0.127 0.873 25 H 0.098 0.902 26 H 0.151 0.849 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -3.867 0.630 4.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.451 4.451 8 H 0.105 0.895 9 C 0.151 3.849 10 C -0.207 4.207 11 C -0.109 4.109 12 C 0.451 3.549 13 F -0.174 7.174 14 F -0.169 7.169 15 F -0.164 7.164 16 C -0.272 4.272 17 C 0.018 3.982 18 N -0.199 5.199 19 H 0.237 0.763 20 C -0.155 4.155 21 C -0.189 4.189 22 C -0.178 4.178 23 H 0.100 0.900 24 H 0.144 0.856 25 H 0.116 0.884 26 H 0.168 0.832 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.849 -3.814 0.609 3.954 hybrid contribution -0.084 0.218 0.104 0.256 sum 0.764 -3.596 0.713 3.745 Atomic orbital electron populations 1.69816 1.07805 1.30331 1.30749 1.26121 0.94878 1.01942 0.92214 0.86217 0.80145 0.79347 0.80333 1.18638 1.20003 1.18406 1.19548 0.98180 0.90725 1.36603 0.89462 1.17913 0.89907 0.89727 0.87316 1.20607 1.00686 0.95240 1.04163 1.19057 0.94815 0.96053 1.00984 1.18774 0.84641 0.72390 0.79103 1.93067 1.90002 1.39011 1.95296 1.93136 1.92329 1.84798 1.46675 1.93165 1.64257 1.76119 1.82859 1.18574 1.01646 0.95388 1.11599 1.17800 0.95619 0.86687 0.98126 1.41560 1.26583 1.07303 1.44490 0.76265 1.21414 0.95094 0.94832 1.04143 1.20411 1.00787 0.93319 1.04347 1.19324 1.00280 0.92666 1.05525 0.90001 0.85576 0.88422 0.83178 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.84 10.96 55.55 0.61 -18.23 15 2 C 0.07 1.66 5.16 -17.31 -0.09 1.57 15 3 Si 0.92 17.49 29.59 -169.99 -5.03 12.46 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.28 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.26 -4.94 7.11 56.52 0.40 -4.53 15 7 C -0.42 -10.61 9.01 -38.02 -0.34 -10.95 15 8 H 0.09 2.07 7.90 -52.49 -0.41 1.65 15 9 C 0.16 4.04 5.72 -104.75 -0.60 3.44 15 10 C -0.19 -4.80 8.17 -38.82 -0.32 -5.12 15 11 C -0.11 -2.55 5.36 -104.79 -0.56 -3.11 15 12 C 0.50 10.93 3.29 36.00 0.12 11.04 15 13 F -0.19 -3.85 15.87 2.25 0.04 -3.82 15 14 F -0.19 -3.98 17.22 2.25 0.04 -3.94 15 15 F -0.18 -4.01 17.22 2.25 0.04 -3.97 15 16 C -0.25 -5.69 9.41 -39.25 -0.37 -6.06 15 17 C 0.13 2.84 7.27 -83.99 -0.61 2.23 15 18 N -0.60 -10.93 6.14 -10.58 -0.06 -11.00 15 19 H 0.40 5.82 8.96 -40.82 -0.37 5.46 15 20 C -0.03 -0.53 11.86 -16.63 -0.20 -0.72 15 21 C -0.16 -3.40 10.74 -39.69 -0.43 -3.83 15 22 C -0.17 -4.22 6.21 -104.67 -0.65 -4.87 15 23 H 0.29 6.44 8.30 -40.82 -0.34 6.10 15 24 H 0.13 3.35 6.18 -52.49 -0.32 3.03 15 25 H 0.10 2.03 7.05 -52.49 -0.37 1.66 15 26 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 27 H 0.13 2.44 8.06 -52.49 -0.42 2.01 15 LS Contribution 255.04 15.07 3.84 3.84 Total: -1.00 -27.27 255.04 -6.03 -33.30 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -1.45 Total: 7.72 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -4.05 Total: -16.38 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.54 Total: -29.23 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 0.11 Total: -11.72 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.27 -6.03 -33.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204504.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.316 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds