Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 120.00093 * 2 1 4 4 H 1.48502 * 109.47157 * 239.99985 * 3 2 1 5 5 H 1.48507 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47297 * 119.99803 * 3 2 1 7 7 C 1.40026 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99763 * 162.85751 * 7 2 1 9 9 C 1.40596 * 119.99885 * 342.85597 * 7 2 1 10 10 C 1.40837 * 120.71890 * 335.20809 * 9 7 2 11 11 C 1.37633 * 120.04243 * 179.97438 * 10 9 7 12 12 C 1.50693 * 119.21154 * 180.02562 * 11 10 9 13 13 F 1.39903 * 109.47427 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.47455 * 299.98495 * 12 11 10 15 15 F 1.39902 * 109.47198 * 59.98160 * 12 11 10 16 16 C 1.38400 * 121.57575 * 0.02562 * 11 10 9 17 17 C 1.38974 * 121.05042 * 0.27917 * 16 11 10 18 18 N 1.37892 * 133.43098 * 180.46348 * 17 16 11 19 19 H 0.96998 * 125.57019 * 359.20122 * 18 17 16 20 20 C 1.36547 * 108.85774 * 179.46015 * 18 17 16 21 21 C 1.34922 * 109.52126 * 359.74579 * 20 18 17 22 22 C 1.40563 * 119.63585 * 359.42484 * 17 16 11 23 23 H 0.96994 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.97726 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.47887 * 179.97438 * 16 11 10 26 26 H 1.07992 * 125.24056 * 179.74635 * 20 18 17 27 27 H 1.08001 * 126.10120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0084 -1.2126 -0.0005 8 1 3.0524 -1.2332 -0.2762 9 6 1.3522 -2.4033 0.3578 10 6 0.2154 -2.3763 1.1887 11 6 -0.4165 -3.5503 1.5303 12 6 -1.6318 -3.4995 2.4199 13 9 -2.1072 -4.7977 2.6346 14 9 -1.2884 -2.9198 3.6460 15 9 -2.6282 -2.7339 1.8050 16 6 0.0377 -4.7764 1.0765 17 6 1.1579 -4.8680 0.2592 18 7 1.8149 -5.9256 -0.3337 19 1 1.5703 -6.8604 -0.2495 20 6 2.8695 -5.4422 -1.0538 21 6 2.9097 -4.0978 -0.9474 22 6 1.8360 -3.6981 -0.1245 23 1 -0.4850 0.8400 0.0004 24 1 -0.1609 -1.4337 1.5579 25 1 -0.4839 -5.6767 1.3660 26 1 3.5645 -6.0434 -1.6211 27 1 3.6347 -3.4442 -1.4096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089204504.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = -121.198502 kcal Electronic energy + Delta-G solvation = -18519.149888 eV Core-core repulsion = 15019.202777 eV Total energy + Delta-G solvation = -3499.947110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.04208 -48.55745 -48.50047 -41.69545 -37.76567 -35.54902 -32.73633 -30.43925 -30.21046 -27.30519 -26.04157 -23.17294 -22.07898 -21.20014 -19.80356 -19.37834 -19.36386 -18.17549 -17.81362 -16.67395 -16.54648 -15.44703 -15.43222 -15.03680 -14.99498 -14.96767 -14.78476 -14.70241 -14.66615 -14.38350 -13.62652 -13.44228 -12.98403 -12.79777 -12.77588 -12.22284 -12.11012 -11.84226 -11.45837 -11.13410 -10.21219 -8.93866 -8.76165 -8.52895 -6.27688 0.38067 1.12835 1.40421 1.52632 1.56586 1.83970 2.09113 2.18313 2.53716 2.61175 3.10111 3.33040 3.42291 3.78884 4.44397 4.45021 4.67274 4.80187 5.00867 5.10452 5.16126 5.39696 5.48374 5.75108 5.85746 6.07128 6.18447 6.31305 6.58790 6.79996 6.91037 7.09747 8.20998 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.010635 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.980992 B = 2632.079005 C = 4200.325833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.032 3.968 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.457 4.457 8 H 0.089 0.911 9 C 0.121 3.879 10 C -0.214 4.214 11 C -0.126 4.126 12 C 0.513 3.487 13 F -0.180 7.180 14 F -0.186 7.186 15 F -0.186 7.186 16 C -0.237 4.237 17 C 0.098 3.902 18 N -0.578 5.578 19 H 0.425 0.575 20 C 0.021 3.979 21 C -0.209 4.209 22 C -0.195 4.195 23 H 0.294 0.706 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.209 0.791 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -5.483 -0.102 5.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.107 0.893 9 C 0.118 3.882 10 C -0.236 4.236 11 C -0.129 4.129 12 C 0.459 3.541 13 F -0.161 7.161 14 F -0.168 7.168 15 F -0.168 7.168 16 C -0.259 4.259 17 C -0.011 4.011 18 N -0.182 5.182 19 H 0.264 0.736 20 C -0.106 4.106 21 C -0.234 4.234 22 C -0.200 4.200 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.226 0.774 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.023 -5.482 -0.116 5.844 hybrid contribution -0.413 0.451 0.276 0.671 sum 1.611 -5.030 0.159 5.284 Atomic orbital electron populations 1.69881 1.09337 1.31415 1.31975 1.26982 0.95510 1.05025 0.91114 0.85149 0.78767 0.74867 0.80435 1.17714 1.19160 1.18253 1.19769 0.98467 0.91687 1.38522 0.89322 1.18311 0.90645 0.91201 0.88053 1.20474 1.02057 0.95165 1.05871 1.19260 0.95697 0.96088 1.01854 1.18463 0.83982 0.72804 0.78836 1.93083 1.89776 1.38032 1.95202 1.93134 1.92335 1.84866 1.46424 1.93154 1.64254 1.76343 1.83007 1.18888 1.01293 0.95623 1.10147 1.17914 0.96196 0.87774 0.99213 1.41616 1.25784 1.07754 1.43020 0.73579 1.22230 0.93563 0.94110 1.00705 1.20672 1.01343 0.95292 1.06066 1.19796 1.01560 0.92715 1.05949 0.89499 0.87601 0.86244 0.77441 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.34 10.96 21.84 0.24 -41.10 15 2 C 0.03 1.55 5.16 85.28 0.44 1.99 15 3 Si 0.99 36.55 29.59 68.60 2.03 38.58 15 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 15 6 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 7 C -0.46 -23.87 9.01 23.28 0.21 -23.66 15 8 H 0.09 4.37 7.90 -2.91 -0.02 4.35 15 9 C 0.12 6.57 5.72 -19.94 -0.11 6.46 15 10 C -0.21 -11.56 8.17 22.76 0.19 -11.38 15 11 C -0.13 -6.15 5.36 -19.97 -0.11 -6.25 15 12 C 0.51 22.32 3.29 71.23 0.23 22.55 15 13 F -0.18 -6.98 15.87 44.97 0.71 -6.27 15 14 F -0.19 -7.97 17.22 44.97 0.77 -7.19 15 15 F -0.19 -8.30 17.22 44.97 0.77 -7.52 15 16 C -0.24 -10.63 9.41 22.48 0.21 -10.42 15 17 C 0.10 4.28 7.27 38.93 0.28 4.57 15 18 N -0.58 -18.93 6.14 -187.39 -1.15 -20.08 15 19 H 0.43 10.24 8.96 -92.71 -0.83 9.41 15 20 C 0.02 0.63 11.86 83.20 0.99 1.62 15 21 C -0.21 -8.37 10.74 22.20 0.24 -8.13 15 22 C -0.20 -9.52 6.21 -19.90 -0.12 -9.65 15 23 H 0.29 13.67 8.30 -92.71 -0.77 12.90 15 24 H 0.11 6.00 6.18 -2.91 -0.02 5.98 15 25 H 0.12 4.71 7.05 -2.91 -0.02 4.68 15 26 H 0.21 4.04 8.06 -2.91 -0.02 4.02 15 27 H 0.14 5.05 8.06 -2.91 -0.02 5.03 15 Total: -1.00 -61.33 255.04 6.24 -55.09 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.41 Total: 20.79 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 2.44 Total: -32.29 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.91 Total: -61.18 kcal Atomic # 9 Polarization: -23.25 SS G_CDS: 2.26 Total: -20.98 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -61.33 6.24 -55.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204504.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.109 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds