Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47274 * 269.99965 * 3 2 1 5 5 H 1.48508 * 109.47157 * 29.99881 * 3 2 1 6 6 H 1.48501 * 109.47458 * 149.99913 * 3 2 1 7 7 C 1.37868 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00174 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47352 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47075 * 180.02562 * 10 9 7 12 12 C 1.35929 * 116.99648 * 175.14539 * 11 10 9 13 13 C 1.38857 * 120.06415 * 274.30348 * 12 11 10 14 14 Cl 1.73597 * 120.03291 * 0.02562 * 13 12 11 15 15 C 1.38213 * 119.92520 * 179.97438 * 13 12 11 16 16 C 1.38293 * 120.04131 * 359.97438 * 15 13 12 17 17 C 1.38234 * 120.11836 * 359.97438 * 16 15 13 18 18 C 1.38196 * 120.08084 * 359.78240 * 17 16 15 19 19 C 1.50697 * 120.02524 * 180.25616 * 18 17 16 20 20 N 1.46899 * 109.47108 * 257.61494 * 19 18 17 21 21 H 0.97004 * 119.99869 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47150 * 59.99577 * 9 7 2 23 23 H 1.08999 * 109.47485 * 299.99641 * 9 7 2 24 24 H 1.09005 * 109.47124 * 299.99771 * 10 9 7 25 25 H 1.08997 * 109.47107 * 59.99826 * 10 9 7 26 26 H 1.08000 * 119.97926 * 179.97438 * 15 13 12 27 27 H 1.08002 * 119.94020 * 180.02562 * 16 15 13 28 28 H 1.08003 * 119.96028 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46645 * 17.61273 * 19 18 17 30 30 H 1.08994 * 109.46945 * 137.60892 * 19 18 17 31 31 H 1.00908 * 110.99664 * 174.31061 * 20 19 18 32 32 H 1.00899 * 110.99650 * 298.26214 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6365 0.0011 12 6 6.0675 -3.8433 0.1036 13 6 6.3019 -4.4008 1.3536 14 17 5.8067 -3.5573 2.7878 15 6 6.9290 -5.6283 1.4545 16 6 7.3221 -6.3009 0.3119 17 6 7.0887 -5.7481 -0.9334 18 6 6.4575 -4.5233 -1.0403 19 6 6.1985 -3.9245 -2.3987 20 7 7.1873 -2.8716 -2.6663 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6807 0.8905 23 1 3.8753 -0.6796 -0.8895 24 1 3.6579 -3.1506 0.8897 25 1 3.6585 -3.1501 -0.8903 26 1 7.1121 -6.0625 2.4263 27 1 7.8116 -7.2602 0.3926 28 1 7.3964 -6.2758 -1.8241 29 1 6.2795 -4.7010 -3.1594 30 1 5.1964 -3.4963 -2.4218 31 1 7.0935 -2.5181 -3.6068 32 1 7.1133 -2.1260 -1.9906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165192158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = -30.741546 kcal Electronic energy + Delta-G solvation = -16520.566182 eV Core-core repulsion = 13699.798565 eV Total energy + Delta-G solvation = -2820.767617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04460 -37.21733 -36.37337 -34.61115 -33.32597 -30.99161 -30.51918 -29.31675 -25.36802 -24.65859 -22.43475 -21.27916 -20.76014 -17.84145 -16.77707 -16.53479 -16.15120 -15.40245 -14.78435 -14.55903 -14.36463 -14.09538 -13.94581 -13.51149 -12.89121 -12.51494 -12.24854 -11.93326 -11.84475 -11.43597 -11.28415 -11.15373 -10.82870 -10.49556 -10.15784 -9.91578 -9.36322 -9.31930 -8.91582 -8.62582 -8.58902 -8.44757 -6.13753 -4.14307 1.10616 1.14215 2.27859 3.26917 3.34786 3.40741 3.42084 4.06420 4.38456 4.61642 4.76998 4.89387 5.14252 5.20441 5.24288 5.27722 5.50520 5.62091 5.78801 5.96651 6.02351 6.12408 6.24135 6.41879 6.47191 6.60687 7.04916 7.11619 7.25781 7.48024 7.62461 7.89439 8.39300 8.87550 9.46766 10.98901 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.006281 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.955327 B = 4457.022910 C = 5132.765696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.073 0.927 9 C -0.005 4.005 10 C 0.083 3.917 11 O -0.337 6.337 12 C 0.127 3.873 13 C -0.063 4.063 14 Cl -0.055 7.055 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.089 4.089 18 C -0.092 4.092 19 C 0.105 3.895 20 N -0.845 5.845 21 H 0.265 0.735 22 H 0.028 0.972 23 H 0.020 0.980 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.341 0.659 32 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -11.016 -1.094 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.043 4.043 10 C 0.011 3.989 11 O -0.254 6.254 12 C 0.081 3.919 13 C -0.090 4.090 14 Cl -0.026 7.026 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.025 4.025 20 N -0.375 5.375 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.292 -11.194 -0.854 18.971 hybrid contribution -0.683 1.359 0.097 1.524 sum 14.610 -9.835 -0.757 17.628 Atomic orbital electron populations 1.69897 1.06274 1.27161 1.50322 1.24922 0.94731 0.99135 0.94161 0.86780 0.80559 0.83374 0.78694 1.20139 1.21179 1.18691 1.20850 0.88435 0.94852 1.52161 0.90860 1.19543 0.96719 0.90347 0.97654 1.22994 0.74532 1.01541 0.99879 1.86055 1.22466 1.23403 1.93492 1.18430 0.96281 0.87086 0.90066 1.21486 1.04146 0.95156 0.88215 1.98386 1.89959 1.77589 1.36684 1.20964 0.98395 0.92981 0.99768 1.21034 1.01164 1.00283 0.91760 1.20997 0.97270 0.94656 0.97894 1.20086 1.00168 0.94521 0.94506 1.20545 0.94472 0.94932 0.92545 1.58795 1.53549 1.16945 1.08216 0.92482 0.95410 0.96207 0.93085 0.93612 0.84912 0.85117 0.85253 0.90357 0.93590 0.84663 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 10 C 0.08 1.73 5.79 37.16 0.22 1.95 16 11 O -0.34 -6.32 8.51 -19.52 -0.17 -6.49 16 12 C 0.13 2.08 5.69 -39.19 -0.22 1.86 16 13 C -0.06 -0.96 6.33 -39.36 -0.25 -1.21 16 14 Cl -0.06 -0.88 28.22 -51.86 -1.46 -2.35 16 15 C -0.10 -1.24 9.83 -39.57 -0.39 -1.63 16 16 C -0.12 -1.32 10.04 -39.56 -0.40 -1.71 16 17 C -0.09 -1.03 9.66 -39.60 -0.38 -1.41 16 18 C -0.09 -1.28 5.45 -104.48 -0.57 -1.85 16 19 C 0.11 1.37 6.53 -4.98 -0.03 1.34 16 20 N -0.84 -10.65 9.58 -11.41 -0.11 -10.76 16 21 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.69 7.20 -51.92 -0.37 0.31 16 23 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 24 H 0.05 1.07 7.90 -51.93 -0.41 0.66 16 25 H 0.05 0.92 7.43 -51.93 -0.39 0.54 16 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.13 1.16 8.02 -52.48 -0.42 0.74 16 29 H 0.08 0.84 7.98 -51.93 -0.41 0.43 16 30 H 0.05 0.67 7.06 -51.93 -0.37 0.30 16 31 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 32 H 0.35 4.90 8.73 -39.29 -0.34 4.56 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -30.65 290.73 -7.73 -38.38 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.90 Total: 2.57 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.58 Total: -16.10 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.66 Total: -37.36 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.17 Total: -6.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.46 Total: -2.35 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.65 -7.73 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165192158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.638 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds