Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47274 * 269.99965 * 3 2 1 5 5 H 1.48508 * 109.47157 * 29.99881 * 3 2 1 6 6 H 1.48501 * 109.47458 * 149.99913 * 3 2 1 7 7 C 1.37868 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00174 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47352 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47075 * 180.02562 * 10 9 7 12 12 C 1.35929 * 116.99648 * 175.14539 * 11 10 9 13 13 C 1.38857 * 120.06415 * 274.30348 * 12 11 10 14 14 Cl 1.73597 * 120.03291 * 0.02562 * 13 12 11 15 15 C 1.38213 * 119.92520 * 179.97438 * 13 12 11 16 16 C 1.38293 * 120.04131 * 359.97438 * 15 13 12 17 17 C 1.38234 * 120.11836 * 359.97438 * 16 15 13 18 18 C 1.38196 * 120.08084 * 359.78240 * 17 16 15 19 19 C 1.50697 * 120.02524 * 180.25616 * 18 17 16 20 20 N 1.46899 * 109.47108 * 257.61494 * 19 18 17 21 21 H 0.97004 * 119.99869 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47150 * 59.99577 * 9 7 2 23 23 H 1.08999 * 109.47485 * 299.99641 * 9 7 2 24 24 H 1.09005 * 109.47124 * 299.99771 * 10 9 7 25 25 H 1.08997 * 109.47107 * 59.99826 * 10 9 7 26 26 H 1.08000 * 119.97926 * 179.97438 * 15 13 12 27 27 H 1.08002 * 119.94020 * 180.02562 * 16 15 13 28 28 H 1.08003 * 119.96028 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46645 * 17.61273 * 19 18 17 30 30 H 1.08994 * 109.46945 * 137.60892 * 19 18 17 31 31 H 1.00908 * 110.99664 * 174.31061 * 20 19 18 32 32 H 1.00899 * 110.99650 * 298.26214 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6365 0.0011 12 6 6.0675 -3.8433 0.1036 13 6 6.3019 -4.4008 1.3536 14 17 5.8067 -3.5573 2.7878 15 6 6.9290 -5.6283 1.4545 16 6 7.3221 -6.3009 0.3119 17 6 7.0887 -5.7481 -0.9334 18 6 6.4575 -4.5233 -1.0403 19 6 6.1985 -3.9245 -2.3987 20 7 7.1873 -2.8716 -2.6663 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6807 0.8905 23 1 3.8753 -0.6796 -0.8895 24 1 3.6579 -3.1506 0.8897 25 1 3.6585 -3.1501 -0.8903 26 1 7.1121 -6.0625 2.4263 27 1 7.8116 -7.2602 0.3926 28 1 7.3964 -6.2758 -1.8241 29 1 6.2795 -4.7010 -3.1594 30 1 5.1964 -3.4963 -2.4218 31 1 7.0935 -2.5181 -3.6068 32 1 7.1133 -2.1260 -1.9906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165192158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = -51.410162 kcal Electronic energy + Delta-G solvation = -16521.462440 eV Core-core repulsion = 13699.798565 eV Total energy + Delta-G solvation = -2821.663876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17771 -38.49625 -37.52183 -35.62850 -35.38518 -32.86279 -31.50236 -30.54979 -27.06527 -25.86953 -23.54856 -22.67361 -22.29898 -19.42462 -18.42450 -17.74446 -17.28872 -16.57827 -16.37944 -15.94807 -15.60204 -15.52358 -15.28817 -14.66177 -14.50583 -14.00993 -13.52843 -13.27745 -13.13081 -12.89557 -12.65055 -12.37728 -12.28926 -12.10262 -11.94228 -11.75624 -11.50475 -10.88931 -10.74976 -9.92189 -9.61754 -9.53127 -8.36770 -6.43253 0.04871 0.15126 1.15520 1.32662 1.35329 1.47955 2.30974 2.35719 2.84228 2.98348 3.62454 3.88475 3.90426 4.17234 4.23139 4.29687 4.30832 4.33882 4.50454 4.64049 4.72083 4.86069 5.10075 5.15191 5.28700 5.33290 5.44214 5.50530 5.72001 6.09811 6.14887 6.47288 6.54670 6.62219 7.21903 8.79257 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.006281 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.955327 B = 4457.022910 C = 5132.765696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.536 4.536 8 H 0.037 0.963 9 C 0.001 3.999 10 C 0.100 3.900 11 O -0.342 6.342 12 C 0.087 3.913 13 C -0.081 4.081 14 Cl -0.074 7.074 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.086 4.086 18 C -0.100 4.100 19 C 0.105 3.895 20 N -0.844 5.844 21 H 0.270 0.730 22 H 0.022 0.978 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.104 0.896 30 H 0.022 0.978 31 H 0.352 0.648 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -12.099 -1.757 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.573 4.573 8 H 0.056 0.944 9 C -0.037 4.037 10 C 0.027 3.973 11 O -0.259 6.259 12 C 0.042 3.958 13 C -0.108 4.108 14 Cl -0.046 7.046 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.101 4.101 19 C -0.025 4.025 20 N -0.374 5.374 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.173 0.827 27 H 0.191 0.809 28 H 0.180 0.820 29 H 0.122 0.878 30 H 0.041 0.959 31 H 0.166 0.834 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.835 -12.297 -1.530 21.717 hybrid contribution -1.419 1.499 0.281 2.083 sum 16.416 -10.798 -1.249 19.688 Atomic orbital electron populations 1.70031 1.08106 1.28474 1.51643 1.25852 0.95579 1.03194 0.93627 0.85703 0.79385 0.78374 0.79526 1.18631 1.20490 1.17643 1.21110 0.90683 0.93680 1.51873 0.94436 1.19364 0.94080 0.92752 0.97463 1.22499 0.76584 0.98980 0.99286 1.86010 1.20679 1.25511 1.93713 1.18743 0.98249 0.87323 0.91513 1.21738 1.05440 0.96360 0.87224 1.98372 1.90315 1.78249 1.37616 1.21330 0.97421 0.91731 1.01720 1.21550 0.99069 1.01177 0.90572 1.21424 0.95856 0.93480 0.99704 1.20311 1.00369 0.95418 0.94006 1.20595 0.93287 0.95575 0.93054 1.58822 1.53190 1.16649 1.08709 0.92104 0.95943 0.95497 0.94221 0.93695 0.82678 0.80914 0.82040 0.87765 0.95945 0.83429 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.96 21.44 0.30 -58.53 16 2 C 0.02 0.92 5.47 84.65 0.46 1.38 16 3 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 7 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C 0.00 0.04 4.41 29.85 0.13 0.18 16 10 C 0.10 4.27 5.79 71.98 0.42 4.68 16 11 O -0.34 -12.96 8.51 -92.75 -0.79 -13.75 16 12 C 0.09 2.79 5.69 22.52 0.13 2.92 16 13 C -0.08 -2.39 6.33 22.41 0.14 -2.24 16 14 Cl -0.07 -2.39 28.22 -2.72 -0.08 -2.46 16 15 C -0.10 -2.23 9.83 22.28 0.22 -2.01 16 16 C -0.11 -1.78 10.04 22.28 0.22 -1.55 16 17 C -0.09 -1.65 9.66 22.26 0.22 -1.43 16 18 C -0.10 -2.62 5.45 -19.77 -0.11 -2.73 16 19 C 0.11 2.58 6.53 85.56 0.56 3.14 16 20 N -0.84 -20.08 9.58 -190.02 -1.82 -21.90 16 21 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 22 H 0.02 1.11 7.20 -2.38 -0.02 1.10 16 23 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 24 H 0.04 1.74 7.90 -2.38 -0.02 1.72 16 25 H 0.04 1.88 7.43 -2.39 -0.02 1.86 16 26 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 28 H 0.16 2.05 8.02 -2.91 -0.02 2.03 16 29 H 0.10 1.96 7.98 -2.39 -0.02 1.94 16 30 H 0.02 0.65 7.06 -2.39 -0.02 0.63 16 31 H 0.35 6.82 9.08 -89.69 -0.81 6.01 16 32 H 0.34 9.33 8.73 -89.70 -0.78 8.55 16 Total: -1.00 -67.91 290.73 1.63 -66.27 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.50 Total: 12.49 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 2.64 Total: -28.67 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.52 Total: -80.42 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.79 Total: -13.75 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.46 kcal Total: -67.91 1.63 -66.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165192158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.864 kcal (2) G-P(sol) polarization free energy of solvation -67.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds