Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28617 * 124.70963 * 2 1 4 4 C 1.33601 * 115.77113 * 180.02562 * 3 2 1 5 5 C 1.47116 * 123.15483 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99591 * 179.97438 * 5 4 3 7 7 O 1.34796 * 120.00206 * 359.97438 * 5 4 3 8 8 C 1.45198 * 117.00214 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47409 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47554 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99501 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00230 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99951 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99750 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47240 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47097 * 120.00029 * 14 12 10 17 17 H 1.48501 * 109.46554 * 239.99626 * 14 12 10 18 18 C 1.35290 * 113.68765 * 359.97438 * 4 3 2 19 19 C 1.50703 * 125.58855 * 180.02562 * 18 4 3 20 20 S 1.70765 * 124.70759 * 180.33786 * 2 1 3 21 21 H 1.09004 * 109.47322 * 89.97987 * 1 2 3 22 22 H 1.09000 * 109.47168 * 209.97843 * 1 2 3 23 23 H 1.08997 * 109.47675 * 329.98055 * 1 2 3 24 24 H 1.09000 * 109.47030 * 300.00211 * 8 7 5 25 25 H 1.08997 * 109.46772 * 60.00007 * 8 7 5 26 26 H 1.09000 * 109.47395 * 300.00230 * 9 8 7 27 27 H 1.09009 * 109.47113 * 59.99917 * 9 8 7 28 28 H 0.97005 * 119.99590 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.47152 * 90.00355 * 19 18 4 30 30 H 1.09001 * 109.46980 * 330.00456 * 19 18 4 31 31 H 1.09004 * 109.47113 * 210.00436 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0573 0.0000 4 6 3.5591 0.8497 -0.0005 5 6 4.5453 1.9414 -0.0012 6 8 5.7339 1.6866 -0.0012 7 8 4.1309 3.2241 -0.0018 8 6 5.1593 4.2491 -0.0018 9 6 4.5022 5.6308 -0.0031 10 6 5.5695 6.6947 -0.0038 11 1 6.6123 6.4134 -0.0029 12 6 5.2149 8.0270 -0.0045 13 7 3.9451 8.3695 -0.0051 14 14 6.5380 9.3457 -0.0060 15 1 7.8769 8.7035 -0.0057 16 1 6.3938 10.1901 -1.2190 17 1 6.3949 10.1917 1.2060 18 6 3.9036 -0.4586 -0.0004 19 6 5.3120 -0.9947 -0.0004 20 16 2.4793 -1.4038 -0.0083 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5141 24 1 5.7791 4.1419 0.8884 25 1 5.7796 4.1413 -0.8915 26 1 3.8827 5.7377 -0.8935 27 1 3.8815 5.7389 0.8865 28 1 3.6957 9.3069 -0.0059 29 1 5.6516 -1.1240 1.0273 30 1 5.9682 -0.2922 -0.5142 31 1 5.3350 -1.9558 -0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179280466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = -59.117472 kcal Electronic energy + Delta-G solvation = -15982.453641 eV Core-core repulsion = 13162.499258 eV Total energy + Delta-G solvation = -2819.954383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60055 -39.03207 -36.16958 -33.43083 -33.30121 -30.64029 -30.11778 -26.95377 -25.17690 -24.16696 -21.75539 -20.78414 -19.47864 -18.70584 -16.74119 -16.16789 -16.13221 -15.86185 -15.07001 -14.57195 -14.40211 -13.65220 -13.58325 -13.16608 -13.07932 -12.58029 -12.37641 -12.36884 -12.30172 -11.88369 -11.20957 -11.00042 -10.73845 -10.66297 -10.23468 -9.85723 -9.61615 -9.59413 -9.56170 -9.24541 -8.95053 -8.41114 -6.06695 -4.11084 0.32094 0.98234 1.38586 1.84700 3.19382 3.27665 3.29829 3.37162 3.42397 3.95838 4.42310 4.65874 4.74335 5.00775 5.16070 5.26171 5.29732 5.39272 5.57987 5.64471 5.83102 5.95355 6.12362 6.14638 6.67211 6.93920 7.36716 7.61364 7.68030 7.90634 8.20231 8.29059 8.94752 9.52999 11.04883 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.038214 B = 0.004121 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.545355 B = 6792.928137 C = 7494.417329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.416 5.416 4 C 0.023 3.977 5 C 0.538 3.462 6 O -0.508 6.508 7 O -0.333 6.333 8 C 0.074 3.926 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.889 5.889 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.183 4.183 19 C -0.088 4.088 20 S 0.193 5.807 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -22.109 -0.026 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.259 4.259 3 N -0.130 5.130 4 C -0.110 4.110 5 C 0.380 3.620 6 O -0.398 6.398 7 O -0.248 6.248 8 C 0.001 3.999 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.307 4.307 19 C -0.147 4.147 20 S 0.451 5.549 21 H 0.106 0.894 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.513 -22.470 -0.035 23.136 hybrid contribution 1.349 1.630 0.019 2.116 sum -4.164 -20.840 -0.016 21.252 Atomic orbital electron populations 1.20457 0.84570 1.04453 1.04147 1.27087 1.02385 0.90910 1.05493 1.67012 1.02779 1.30596 1.12663 1.19400 0.89671 0.91206 1.10705 1.19788 0.85908 0.83195 0.73130 1.90777 1.17145 1.84845 1.47059 1.86722 1.42102 1.14188 1.81768 1.23724 0.88845 0.86337 1.00979 1.19172 0.96885 0.86174 0.99030 1.21018 0.92718 0.90557 1.52061 0.92189 1.24987 0.95578 0.98694 0.94913 1.69995 1.15592 1.17325 1.49851 0.86418 0.81770 0.81462 0.77679 1.19590 1.20838 1.20844 1.25579 1.03395 0.96177 1.05514 1.20585 0.88595 1.01553 1.03977 1.82692 0.94344 1.11723 1.66183 0.89416 0.90061 0.88797 0.92168 0.92176 0.95266 0.95268 0.92786 0.89756 0.87552 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 36.00 0.38 -0.22 16 2 C 0.02 0.26 7.34 -13.62 -0.10 0.16 16 3 N -0.42 -6.85 10.60 -8.53 -0.09 -6.94 16 4 C 0.02 0.38 6.71 -84.55 -0.57 -0.18 16 5 C 0.54 10.74 7.94 34.33 0.27 11.02 16 6 O -0.51 -10.26 13.90 -19.31 -0.27 -10.53 16 7 O -0.33 -7.53 10.16 -40.75 -0.41 -7.94 16 8 C 0.07 1.74 5.42 37.16 0.20 1.94 16 9 C 0.02 0.67 5.35 -27.89 -0.15 0.52 16 10 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 11 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.18 -2.40 6.40 -35.36 -0.23 -2.62 16 19 C -0.09 -0.97 9.65 36.01 0.35 -0.62 16 20 S 0.19 1.83 22.89 -107.50 -2.46 -0.63 16 21 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.40 6.00 -51.93 -0.31 1.09 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -33.35 290.83 -7.05 -40.40 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -3.66 Total: -5.41 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.26 Total: -3.84 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.65 Total: -33.16 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.68 Total: -18.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.35 -7.05 -40.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179280466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.721 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds