Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28617 * 124.70963 * 2 1 4 4 C 1.33601 * 115.77113 * 180.02562 * 3 2 1 5 5 C 1.47116 * 123.15483 * 179.97438 * 4 3 2 6 6 O 1.21554 * 119.99591 * 179.97438 * 5 4 3 7 7 O 1.34796 * 120.00206 * 359.97438 * 5 4 3 8 8 C 1.45198 * 117.00214 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47409 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47554 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99501 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00230 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99951 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99750 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47240 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47097 * 120.00029 * 14 12 10 17 17 H 1.48501 * 109.46554 * 239.99626 * 14 12 10 18 18 C 1.35290 * 113.68765 * 359.97438 * 4 3 2 19 19 C 1.50703 * 125.58855 * 180.02562 * 18 4 3 20 20 S 1.70765 * 124.70759 * 180.33786 * 2 1 3 21 21 H 1.09004 * 109.47322 * 89.97987 * 1 2 3 22 22 H 1.09000 * 109.47168 * 209.97843 * 1 2 3 23 23 H 1.08997 * 109.47675 * 329.98055 * 1 2 3 24 24 H 1.09000 * 109.47030 * 300.00211 * 8 7 5 25 25 H 1.08997 * 109.46772 * 60.00007 * 8 7 5 26 26 H 1.09000 * 109.47395 * 300.00230 * 9 8 7 27 27 H 1.09009 * 109.47113 * 59.99917 * 9 8 7 28 28 H 0.97005 * 119.99590 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.47152 * 90.00355 * 19 18 4 30 30 H 1.09001 * 109.46980 * 330.00456 * 19 18 4 31 31 H 1.09004 * 109.47113 * 210.00436 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0573 0.0000 4 6 3.5591 0.8497 -0.0005 5 6 4.5453 1.9414 -0.0012 6 8 5.7339 1.6866 -0.0012 7 8 4.1309 3.2241 -0.0018 8 6 5.1593 4.2491 -0.0018 9 6 4.5022 5.6308 -0.0031 10 6 5.5695 6.6947 -0.0038 11 1 6.6123 6.4134 -0.0029 12 6 5.2149 8.0270 -0.0045 13 7 3.9451 8.3695 -0.0051 14 14 6.5380 9.3457 -0.0060 15 1 7.8769 8.7035 -0.0057 16 1 6.3938 10.1901 -1.2190 17 1 6.3949 10.1917 1.2060 18 6 3.9036 -0.4586 -0.0004 19 6 5.3120 -0.9947 -0.0004 20 16 2.4793 -1.4038 -0.0083 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5141 24 1 5.7791 4.1419 0.8884 25 1 5.7796 4.1413 -0.8915 26 1 3.8827 5.7377 -0.8935 27 1 3.8815 5.7389 0.8865 28 1 3.6957 9.3069 -0.0059 29 1 5.6516 -1.1240 1.0273 30 1 5.9682 -0.2922 -0.5142 31 1 5.3350 -1.9558 -0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179280466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = -80.926537 kcal Electronic energy + Delta-G solvation = -15983.399353 eV Core-core repulsion = 13162.499258 eV Total energy + Delta-G solvation = -2820.900095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91258 -40.37915 -37.82083 -35.48560 -34.37529 -32.44789 -31.24373 -28.23400 -26.87883 -25.45947 -23.23387 -22.58278 -20.76937 -19.79856 -18.63366 -17.72929 -17.67936 -17.44893 -16.51337 -16.26111 -15.45747 -15.00612 -14.59949 -14.43024 -14.33786 -14.28630 -13.69788 -13.24239 -13.16300 -13.09213 -13.02621 -12.87927 -12.64337 -12.57675 -11.86611 -11.55374 -11.53232 -11.36419 -10.79054 -10.64852 -10.46055 -9.91531 -8.28941 -6.43421 -0.69221 0.10178 0.42513 0.62127 1.39626 1.41288 1.54802 1.74802 1.95716 2.38713 2.96853 3.05119 3.61132 3.82095 3.91581 4.15914 4.16775 4.45091 4.58188 4.62592 4.70269 4.71424 4.75629 5.01295 5.17470 5.24660 5.40175 5.45551 5.69274 6.02033 6.32468 6.68872 6.72293 7.26668 8.84394 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.038214 B = 0.004121 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.545355 B = 6792.928137 C = 7494.417329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.006 3.994 3 N -0.471 5.471 4 C -0.021 4.021 5 C 0.531 3.469 6 O -0.519 6.519 7 O -0.354 6.354 8 C 0.089 3.911 9 C 0.032 3.968 10 C -0.550 4.550 11 H 0.068 0.932 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.979 3.021 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.189 4.189 19 C -0.090 4.090 20 S 0.316 5.684 21 H 0.103 0.897 22 H 0.116 0.884 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.268 0.732 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -24.355 -0.021 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.273 4.273 3 N -0.187 5.187 4 C -0.153 4.153 5 C 0.375 3.625 6 O -0.410 6.410 7 O -0.270 6.270 8 C 0.016 3.984 9 C -0.005 4.005 10 C -0.588 4.588 11 H 0.086 0.914 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.802 3.198 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.313 4.313 19 C -0.148 4.148 20 S 0.574 5.426 21 H 0.121 0.879 22 H 0.135 0.865 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.345 -24.754 -0.031 25.324 hybrid contribution 1.176 2.109 0.016 2.415 sum -4.169 -22.645 -0.015 23.025 Atomic orbital electron populations 1.20691 0.82036 1.05659 1.05475 1.27782 1.04173 0.91637 1.03744 1.66970 1.02993 1.33514 1.15236 1.19137 0.89724 0.91235 1.15181 1.20431 0.86903 0.82707 0.72433 1.90749 1.17732 1.84771 1.47767 1.86700 1.41915 1.15609 1.82727 1.23265 0.88569 0.85254 1.01276 1.18974 0.96350 0.88807 0.96408 1.21391 0.93260 0.91466 1.52652 0.91378 1.26038 0.98196 1.01305 0.93902 1.70127 1.18006 1.18297 1.50322 0.85196 0.78642 0.77880 0.78077 1.18415 1.19934 1.19944 1.26069 1.06310 0.95855 1.03091 1.20669 0.87005 1.02445 1.04731 1.82215 0.89907 1.07567 1.62875 0.87903 0.86523 0.89950 0.91768 0.91774 0.97909 0.97911 0.92282 0.88723 0.90147 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.46 71.24 0.74 -0.30 16 2 C 0.01 0.14 7.34 88.58 0.65 0.79 16 3 N -0.47 -15.72 10.60 -180.91 -1.92 -17.63 16 4 C -0.02 -0.72 6.71 40.53 0.27 -0.44 16 5 C 0.53 22.18 7.94 70.15 0.56 22.74 16 6 O -0.52 -21.70 13.90 19.66 0.27 -21.43 16 7 O -0.35 -16.95 10.16 -57.07 -0.58 -17.53 16 8 C 0.09 4.42 5.42 71.98 0.39 4.81 16 9 C 0.03 1.84 5.35 29.85 0.16 2.00 16 10 C -0.55 -32.55 9.11 25.60 0.23 -32.31 16 11 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 12 C 0.00 0.26 5.46 84.66 0.46 0.72 16 13 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 14 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C -0.19 -4.64 6.40 25.01 0.16 -4.48 16 19 C -0.09 -1.81 9.65 71.24 0.69 -1.12 16 20 S 0.32 4.82 22.89 -56.49 -1.29 3.53 16 21 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 28 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.09 6.00 -2.39 -0.01 2.08 16 31 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -75.95 290.83 4.25 -71.70 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 1.14 Total: -0.49 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.32 Total: -7.60 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.63 Total: -74.98 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.31 Total: -38.96 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.29 Total: 3.53 kcal Total: -75.95 4.25 -71.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179280466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.230 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds