Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34766 * 116.99894 * 89.99921 * 13 3 2 15 15 O 1.21540 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.47198 * 120.00046 * 180.02562 * 14 13 3 17 17 C 1.37987 * 123.09591 * 359.69868 * 16 14 13 18 18 S 1.72019 * 105.35546 * 179.97438 * 17 16 14 19 19 N 1.69474 * 96.03900 * 0.30697 * 18 17 16 20 20 C 1.29500 * 107.86760 * 359.81164 * 19 18 17 21 21 C 1.50699 * 121.53009 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 1.07995 * 127.31891 * 0.02562 * 17 16 14 29 29 H 1.09005 * 109.46993 * 269.98250 * 21 20 19 30 30 H 1.09004 * 109.47159 * 29.98212 * 21 20 19 31 31 H 1.08997 * 109.46969 * 149.98522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2280 2.7396 -0.2597 16 6 0.0131 3.4081 -2.4795 17 6 0.7532 3.4394 -3.6437 18 16 -0.1947 4.3394 -4.7620 19 7 -1.4814 4.6428 -3.7015 20 6 -1.2008 4.0854 -2.5668 21 6 -2.1447 4.1655 -1.3947 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 1.7212 2.9930 -3.8164 29 1 -1.9122 5.0495 -0.8008 30 1 -3.1703 4.2313 -1.7579 31 1 -2.0342 3.2739 -0.7776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187918500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = -72.081509 kcal Electronic energy + Delta-G solvation = -16896.310510 eV Core-core repulsion = 14075.793963 eV Total energy + Delta-G solvation = -2820.516546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62655 -39.76587 -37.45598 -35.51865 -33.46146 -32.70218 -30.58085 -29.30124 -26.10422 -25.03881 -23.23807 -21.64744 -20.61570 -19.34670 -18.53510 -18.35292 -17.21739 -17.09818 -16.35530 -15.69538 -15.41657 -14.87870 -14.71736 -14.40176 -13.95132 -13.45655 -13.35739 -13.32749 -13.28392 -13.10058 -12.78696 -12.55239 -12.42108 -12.14110 -11.82953 -11.72350 -11.40424 -11.10033 -10.85799 -10.81084 -10.50415 -9.77531 -8.25680 -6.42188 -0.69691 0.24886 0.60018 0.63669 1.43439 1.46345 1.54288 1.98192 1.99735 2.43287 3.04371 3.43030 3.87778 4.02027 4.30339 4.40364 4.42600 4.44864 4.57975 4.63567 4.68853 4.85911 5.11194 5.15220 5.23841 5.35808 5.51198 5.59918 5.69646 5.99164 6.13265 6.61710 6.96848 7.28876 8.80779 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.030560 B = 0.005843 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.997250 B = 4791.020262 C = 5316.524997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.355 6.355 14 C 0.520 3.480 15 O -0.525 6.525 16 C -0.230 4.230 17 C -0.132 4.132 18 S 0.360 5.640 19 N -0.498 5.498 20 C 0.164 3.836 21 C -0.095 4.095 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.270 0.730 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 5.055 -11.764 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.189 1.189 13 O -0.272 6.272 14 C 0.363 3.637 15 O -0.417 6.417 16 C -0.250 4.250 17 C -0.281 4.281 18 S 0.515 5.485 19 N -0.320 5.320 20 C -0.012 4.012 21 C -0.156 4.156 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.233 0.767 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.478 6.002 -13.112 15.808 hybrid contribution 1.392 -0.993 2.151 2.748 sum -5.086 5.009 -10.961 13.081 Atomic orbital electron populations 1.21719 0.96228 1.00579 1.00230 1.21871 0.94518 0.98055 1.02338 1.20411 0.94479 0.89247 0.78386 0.97055 1.21294 0.90501 1.40022 1.06942 0.91491 1.25750 1.03977 0.93920 0.94405 1.69999 1.37432 1.37863 1.09812 0.85307 0.77989 0.78709 0.77870 1.19494 1.20366 1.18891 1.86503 1.34847 1.63012 1.42818 1.20457 0.80058 0.75979 0.87174 1.90717 1.55153 1.59804 1.36016 1.19711 0.98657 1.11427 0.95167 1.28003 1.05126 0.98490 0.96491 1.83689 1.05284 1.42436 1.17073 1.76325 1.22709 1.27250 1.05685 1.21420 0.93394 0.91335 0.95094 1.20911 0.96958 1.05308 0.92464 0.94538 0.94139 0.92183 0.89516 0.93632 0.92041 0.76695 0.89317 0.88933 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.56 71.98 0.62 -4.93 16 2 C -0.13 -6.36 5.49 30.59 0.17 -6.19 16 3 C 0.23 12.02 2.25 29.85 0.07 12.09 16 4 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 5 C -0.55 -30.31 8.90 25.60 0.23 -30.08 16 6 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -51.19 11.29 21.45 0.24 -50.95 16 9 Si 0.98 41.90 29.54 68.60 2.03 43.92 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 O -0.36 -16.43 9.48 -56.77 -0.54 -16.97 16 14 C 0.52 21.48 6.36 70.18 0.45 21.92 16 15 O -0.52 -23.40 10.94 19.71 0.22 -23.18 16 16 C -0.23 -7.48 5.86 -20.73 -0.12 -7.60 16 17 C -0.13 -3.32 11.06 67.76 0.75 -2.57 16 18 S 0.36 7.43 23.69 -56.49 -1.34 6.09 16 19 N -0.50 -13.51 11.97 -51.05 -0.61 -14.12 16 20 C 0.16 4.88 6.75 43.15 0.29 5.17 16 21 C -0.10 -2.62 9.51 71.24 0.68 -1.94 16 22 H 0.04 1.49 6.06 -2.39 -0.01 1.48 16 23 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 24 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.09 4.66 5.95 -2.39 -0.01 4.65 16 26 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.22 4.60 8.06 -2.91 -0.02 4.57 16 29 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.94 5.63 -2.39 -0.01 2.93 16 Total: -1.00 -62.35 277.60 4.71 -57.63 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.15 Total: 10.22 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 3.57 Total: -12.65 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.37 Total: -65.07 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.32 Total: -40.16 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -1.34 Total: 6.09 kcal Total: -62.35 4.71 -57.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187918500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.447 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds