Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 H 1.09000 * 109.47442 * 54.99553 * 3 2 1 5 5 C 1.50693 * 109.47430 * 175.00081 * 3 2 1 6 6 H 1.08002 * 120.00503 * 119.99325 * 5 3 2 7 7 C 1.37882 * 119.99694 * 300.00217 * 5 3 2 8 8 N 1.31512 * 119.99649 * 180.02562 * 7 5 3 9 9 Si 1.86790 * 120.00178 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47190 * 90.00446 * 9 7 5 11 11 H 1.48505 * 109.47473 * 210.00646 * 9 7 5 12 12 H 1.48509 * 109.47202 * 330.00574 * 9 7 5 13 13 O 1.45207 * 109.46598 * 294.99811 * 3 2 1 14 14 C 1.34876 * 116.99662 * 90.00440 * 13 3 2 15 15 O 1.21610 * 120.00446 * 359.97438 * 14 13 3 16 16 C 1.46506 * 119.99526 * 180.02562 * 14 13 3 17 17 C 1.36765 * 126.17469 * 179.97438 * 16 14 13 18 18 N 1.30912 * 113.93072 * 179.97438 * 17 16 14 19 19 C 1.29397 * 117.46882 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.70799 * 179.97438 * 19 18 17 21 21 S 1.70927 * 110.58337 * 359.97438 * 19 18 17 22 22 H 1.09000 * 109.47267 * 60.00439 * 1 2 3 23 23 H 1.09008 * 109.47435 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47566 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.46820 * 239.99684 * 2 1 3 26 26 H 1.09008 * 109.46731 * 119.99893 * 2 1 3 27 27 H 0.96998 * 119.99827 * 179.97438 * 8 7 5 28 28 H 1.07995 * 123.03268 * 359.73198 * 17 16 14 29 29 H 1.08999 * 109.47094 * 270.04287 * 20 19 18 30 30 H 1.08996 * 109.47109 * 30.04357 * 20 19 18 31 31 H 1.09002 * 109.46717 * 150.04120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2280 8 7 5.4538 0.8804 1.3363 9 14 3.0963 0.1100 2.5706 10 1 2.8745 -1.3261 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 8 1.6559 2.0915 -1.2408 14 6 0.4670 2.7284 -1.2561 15 8 -0.2295 2.7401 -0.2593 16 6 0.0142 3.4051 -2.4741 17 6 -1.1621 4.0850 -2.6300 18 7 -1.3242 4.5992 -3.8230 19 6 -0.3810 4.4087 -4.6882 20 6 -0.3982 4.9251 -6.1038 21 16 0.8869 3.4902 -4.0025 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 5.8769 0.4826 2.1132 28 1 -1.8931 4.1853 -1.8414 29 1 -0.8622 4.1844 -6.7551 30 1 -0.9681 5.8532 -6.1452 31 1 0.6235 5.1110 -6.4351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187955041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -44.209265 kcal Electronic energy + Delta-G solvation = -16617.745605 eV Core-core repulsion = 13798.437690 eV Total energy + Delta-G solvation = -2819.307915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14418 -39.31401 -36.08054 -33.67318 -32.38862 -31.93538 -29.04206 -27.77010 -24.67993 -23.12118 -22.34168 -20.38495 -19.28154 -18.49005 -17.12317 -16.46920 -16.07282 -15.82430 -15.06552 -14.74779 -14.30816 -13.69675 -13.51202 -13.01527 -12.86487 -12.60020 -12.42656 -12.03531 -11.85313 -11.57254 -11.52509 -11.27452 -10.80368 -10.25745 -10.06062 -9.82188 -9.68968 -9.57764 -9.51857 -9.14246 -8.92697 -8.69854 -6.27110 -4.30035 0.16307 1.15057 1.62322 2.40335 3.15390 3.23266 3.28034 3.28964 3.32001 3.97936 4.22587 4.80018 5.02137 5.12691 5.16205 5.19866 5.43351 5.59988 5.77190 5.86782 5.93481 6.02137 6.36864 6.52150 6.60434 6.68031 6.96383 7.26094 7.42663 7.52299 8.11670 8.46681 8.79173 9.29294 10.84777 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.005797 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.733374 B = 4828.735202 C = 5250.847586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.199 3.801 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.335 6.335 14 C 0.534 3.466 15 O -0.502 6.502 16 C -0.277 4.277 17 C 0.119 3.881 18 N -0.483 5.483 19 C 0.033 3.967 20 C -0.080 4.080 21 S 0.229 5.771 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.189 0.811 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 4.513 -12.119 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.145 3.855 4 H 0.067 0.933 5 C -0.564 4.564 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.251 6.251 14 C 0.376 3.624 15 O -0.393 6.393 16 C -0.400 4.400 17 C -0.040 4.040 18 N -0.198 5.198 19 C -0.240 4.240 20 C -0.140 4.140 21 S 0.486 5.514 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.206 0.794 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.076 4.366 -12.295 16.485 hybrid contribution -1.095 -0.489 1.683 2.067 sum -11.171 3.877 -10.612 15.888 Atomic orbital electron populations 1.21909 0.96936 1.00151 1.01796 1.22376 0.94408 0.99465 1.02371 1.21057 0.96494 0.88112 0.79824 0.93331 1.20763 0.87511 1.40154 1.08019 0.89427 1.24715 0.94954 0.95197 0.97320 1.69829 1.08489 1.44155 1.29810 0.87010 0.81043 0.80165 0.81313 1.19850 1.21583 1.18454 1.86610 1.33162 1.62401 1.42902 1.19316 0.81101 0.76493 0.85495 1.90841 1.55642 1.58800 1.34001 1.25292 1.02059 1.13633 0.98968 1.22462 0.95004 0.92522 0.93978 1.66202 1.29014 1.22977 1.01646 1.27601 0.94208 1.00658 1.01533 1.20499 1.04019 1.02504 0.86949 1.84296 1.19715 1.45410 1.01969 0.93664 0.93788 0.92434 0.91128 0.91607 0.91986 0.79412 0.89268 0.89105 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.56 37.16 0.32 -2.65 16 2 C -0.15 -3.34 5.15 -26.73 -0.14 -3.48 16 3 C 0.20 4.95 1.84 -27.89 -0.05 4.90 16 4 H 0.05 1.28 6.22 -51.93 -0.32 0.95 16 5 C -0.53 -14.91 9.48 -34.44 -0.33 -15.24 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.08 2.32 5.45 -17.82 -0.10 2.22 16 8 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 9 Si 0.88 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.27 -6.35 6.83 56.52 0.39 -5.97 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 O -0.34 -7.65 9.70 -40.97 -0.40 -8.04 16 14 C 0.53 10.87 6.38 34.06 0.22 11.09 16 15 O -0.50 -10.95 14.06 -19.35 -0.27 -11.22 16 16 C -0.28 -4.57 6.52 -36.79 -0.24 -4.81 16 17 C 0.12 1.75 11.16 -18.48 -0.21 1.54 16 18 N -0.48 -6.61 10.50 -11.26 -0.12 -6.73 16 19 C 0.03 0.38 7.37 -13.30 -0.10 0.28 16 20 C -0.08 -0.56 10.46 36.01 0.38 -0.19 16 21 S 0.23 3.02 23.04 -107.50 -2.48 0.54 16 22 H 0.04 0.87 6.06 -51.93 -0.31 0.56 16 23 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.06 1.17 7.79 -51.93 -0.40 0.76 16 25 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.07 1.52 3.22 -51.92 -0.17 1.36 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 276.93 15.07 4.17 4.17 Total: -1.00 -31.54 276.93 -6.06 -37.60 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -3.35 Total: -1.62 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.24 Total: -6.33 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.66 Total: -32.32 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.67 Total: -19.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.48 Total: 0.54 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.54 -6.06 -37.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187955041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.607 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds